SRR3553818_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553818_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	590874
Sequences flagged as poor quality	0
Sequence length	46
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3640	0.61603658309555	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1737	0.2939713035266402	No Hit
CCTGTCTCTTATACACATCTGACGCGACAGGTATCGTATGCCGTCT	1690	0.2860169850086482	No Hit
GCTGTCTCTTATACACATCTGACGCGACAGGTATCGTATGCCGTCT	927	0.15688623970592716	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	911	0.15417838659341923	No Hit
CTGTCTCTTATACACATCTGACGCGACAGGTATCGTATGCCGTCTT	836	0.1414853251285384	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	695	0.11762236957456242	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGA	670	0.11339134908626883	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA	634	0.10729867958312603	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGACAGGTATCGT	610	0.10323689991436413	No Hit
TATGAAAACTATGCCCTCGTGTACTCCTGCACCACCTTCTTCTGGC	609	0.1030676590948324	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTCTACG	20	0.0012552734	40.000004	1
CGTAGTG	20	0.0012552734	40.000004	28
CCATACT	20	0.0012552734	40.000004	31
ACGAACA	20	0.0012552734	40.000004	20
TTTCGAC	25	7.79005E-5	40.0	30
GTATGCG	30	4.863494E-6	40.0	1
CTACGAA	85	0.0	40.0	11
TCATCGG	30	4.863494E-6	40.0	2
TACGAAT	90	0.0	37.777775	12
GCTACGA	90	0.0	37.777775	10
CGTTCAT	75	0.0	37.333332	17
AACGGGA	340	0.0	36.47059	4
TAGGGCG	380	0.0	36.31579	5
AATATAC	105	0.0	36.190475	16
GCACTTA	505	0.0	36.039604	36
TACGAAG	50	3.4197E-9	36.0	1
TATGCGG	95	0.0	35.789474	2
CGAATAT	95	0.0	35.789474	14
CGAAAGG	140	0.0	35.714287	2
TGCGGGC	180	0.0	35.555553	4