SRR3553815_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553815_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	659000
Sequences flagged as poor quality	0
Sequence length	46
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	4136	0.6276176024279211	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3475	0.5273141122913505	No Hit
GCTGTCTCTTATACACATCTGACGCATAGAGCCTCGTATGCCGTCT	721	0.10940819423368742	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	705	0.10698027314112292	No Hit
CCTGTCTCTTATACACATCTGACGCATAGAGCCTCGTATGCCGTCT	670	0.10166919575113809	No Hit
CTGTCTCTTATACACATCTGACGCATAGAGCCTCGTATGCCGTCTT	666	0.10106221547799697	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TACCCGT	25	7.7910314E-5	40.0	34
CAAACGC	25	7.7910314E-5	40.0	34
GTCGATA	20	0.0012553791	40.0	30
ACCGAAT	20	0.0012553791	40.0	25
CGTTCGA	25	7.7910314E-5	40.0	14
GCCGATA	40	1.9261279E-8	40.0	9
GTCCCGA	20	0.0012553791	40.0	38
TTCATCG	20	0.0012553791	40.0	14
GACGATT	20	0.0012553791	40.0	28
CGGTATG	45	1.2205419E-9	40.0	6
CACCGAA	30	4.8643487E-6	40.0	24
CCCGGAT	30	4.8643487E-6	40.0	19
GTGCGAT	20	0.0012553791	40.0	17
TGTCGAT	20	0.0012553791	40.0	29
GCCCGTT	20	0.0012553791	40.0	33
ATACAAC	20	0.0012553791	40.0	12
TATCCGG	35	3.0537376E-7	40.0	2
ACGGTCT	40	1.9261279E-8	40.0	30
CGGGTAT	155	0.0	38.709675	6
CATATCA	100	0.0	38.0	29