##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3553815_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 659000 Sequences flagged as poor quality 0 Sequence length 46 %GC 49 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.810098634294384 31.0 31.0 34.0 30.0 34.0 2 31.962787556904402 33.0 31.0 34.0 30.0 34.0 3 31.908945371775417 33.0 31.0 34.0 30.0 34.0 4 35.67222761760243 37.0 35.0 37.0 33.0 37.0 5 35.481858877086495 37.0 35.0 37.0 33.0 37.0 6 35.48844157814871 37.0 35.0 37.0 33.0 37.0 7 35.78157207890744 37.0 35.0 37.0 35.0 37.0 8 35.58436418816388 37.0 35.0 37.0 35.0 37.0 9 37.34601972685888 39.0 37.0 39.0 34.0 39.0 10 36.82068285280728 39.0 37.0 39.0 32.0 39.0 11 36.79902124430956 39.0 37.0 39.0 32.0 39.0 12 36.81835963581184 39.0 37.0 39.0 33.0 39.0 13 35.15269802731411 39.0 35.0 39.0 30.0 39.0 14 36.968327769347496 40.0 36.0 41.0 30.0 41.0 15 37.594280728376326 40.0 36.0 41.0 32.0 41.0 16 37.78111836115326 40.0 37.0 41.0 33.0 41.0 17 37.82184522003035 39.0 37.0 41.0 33.0 41.0 18 37.840298937784524 39.0 37.0 41.0 33.0 41.0 19 37.7917875569044 40.0 37.0 41.0 33.0 41.0 20 37.749743550834594 40.0 36.0 41.0 33.0 41.0 21 37.622039453717754 39.0 36.0 41.0 33.0 41.0 22 37.602253414264034 39.0 36.0 41.0 33.0 41.0 23 37.501151745068285 39.0 36.0 41.0 32.0 41.0 24 37.430367223065254 39.0 36.0 41.0 32.0 41.0 25 37.215810318664644 39.0 35.0 41.0 32.0 41.0 26 37.205723823975724 39.0 35.0 41.0 32.0 41.0 27 37.1721502276176 39.0 35.0 41.0 32.0 41.0 28 37.03640819423369 39.0 35.0 41.0 31.0 41.0 29 36.95081790591806 39.0 35.0 41.0 31.0 41.0 30 36.78790440060698 39.0 35.0 40.0 31.0 41.0 31 36.71649165402125 39.0 35.0 40.0 31.0 41.0 32 36.5782564491654 39.0 35.0 40.0 30.0 41.0 33 36.46812291350531 39.0 35.0 40.0 30.0 41.0 34 36.33046737481032 39.0 35.0 40.0 30.0 41.0 35 36.24894840667678 39.0 35.0 40.0 30.0 41.0 36 36.08991502276176 38.0 35.0 40.0 29.0 41.0 37 36.05774658573596 38.0 35.0 40.0 29.0 41.0 38 35.927405159332324 38.0 35.0 40.0 29.0 41.0 39 35.81020485584219 38.0 35.0 40.0 29.0 41.0 40 35.68377086494689 38.0 35.0 40.0 28.0 41.0 41 35.55181335356601 38.0 35.0 40.0 27.0 41.0 42 35.44322306525038 38.0 34.0 40.0 27.0 41.0 43 35.36289529590288 38.0 34.0 40.0 27.0 41.0 44 35.22260091047041 38.0 34.0 40.0 26.0 41.0 45 35.14278603945372 38.0 34.0 40.0 26.0 41.0 46 34.10184522003035 37.0 33.0 40.0 23.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 1.0 8 11.0 9 24.0 10 32.0 11 30.0 12 21.0 13 20.0 14 20.0 15 29.0 16 48.0 17 106.0 18 178.0 19 342.0 20 614.0 21 1000.0 22 1604.0 23 2261.0 24 3246.0 25 4248.0 26 5764.0 27 7415.0 28 9349.0 29 11193.0 30 13674.0 31 17187.0 32 22347.0 33 29633.0 34 43708.0 35 55701.0 36 67970.0 37 93982.0 38 134642.0 39 132600.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 33.47678300455235 22.85720789074355 21.721699544764796 21.944309559939303 2 25.943854324734446 27.171623672230655 23.129438543247343 23.755083459787556 3 28.307738998482552 27.116388467374808 23.335660091047043 21.2402124430956 4 25.184066767830043 28.45204855842185 22.047040971168435 24.316843702579664 5 21.330955993930196 32.807283763277695 20.95386949924127 24.907890743550833 6 20.385735963581183 40.428528072837636 21.085128983308042 18.10060698027314 7 82.19241274658575 6.512746585735964 7.394081942336873 3.9007587253414266 8 81.79514415781487 6.096054628224583 7.48649468892261 4.622306525037937 9 75.18679817905918 8.154779969650987 10.559939301972685 6.098482549317148 10 34.252200303490135 28.662822458270103 17.583459787556905 19.501517450682854 11 27.82018209408194 28.67101669195751 23.558118361153262 19.950682852807283 12 23.221396054628222 24.44992412746586 30.30485584218513 22.023823975720788 13 23.142185128983307 26.107283763277696 30.58952959028832 20.161001517450682 14 21.91502276176024 27.395599393019726 28.026403641881636 22.66297420333839 15 21.04339908952959 25.871623672230655 30.832625189681334 22.25235204855842 16 22.89226100151745 25.69059180576631 28.67177541729894 22.7453717754173 17 22.020182094081942 25.42291350531108 28.195447647951443 24.36145675265554 18 23.29620637329287 24.893626707132018 28.32928679817906 23.480880121396055 19 24.960242792109256 27.469195751138088 25.7701062215478 21.800455235204854 20 26.03444613050076 25.923065250379363 25.50333839150228 22.5391502276176 21 26.683915022761763 26.557511380880122 25.897268588770867 20.86130500758725 22 24.636115326251897 25.16919575113809 25.23080424886191 24.9638846737481 23 23.57738998482549 27.057359635811835 25.352959028831563 24.012291350531108 24 22.652959028831564 26.598937784522004 27.227921092564493 23.520182094081942 25 24.07101669195751 27.24400606980273 25.0804248861912 23.604552352048557 26 22.554931714719274 26.9453717754173 25.935053110773897 24.56464339908953 27 22.824582701062216 25.923065250379363 26.82443095599393 24.427921092564493 28 22.223065250379364 27.606676783004552 27.144613050075872 23.025644916540212 29 23.42503793626707 27.28103186646434 25.506373292867984 23.787556904400606 30 23.910622154779972 26.841578148710166 26.03429438543247 23.21350531107739 31 24.194992412746586 28.327465857359634 24.329742033383912 23.147799696509864 32 24.303186646433993 27.822913505311075 24.38679817905918 23.487101669195752 33 23.444006069802732 27.21380880121396 24.585432473444612 24.756752655538694 34 23.271775417298937 28.82245827010622 25.00242792109256 22.903338391502277 35 25.012594840667678 26.027921092564494 25.220485584218512 23.738998482549317 36 23.445220030349017 29.6154779969651 23.61836115326252 23.32094081942337 37 24.232018209408192 28.221699544764796 24.42245827010622 23.12382397572079 38 23.896509863429436 28.154779969650985 24.602124430955993 23.346585735963583 39 24.427162367223065 25.66540212443096 24.190440060698027 25.71699544764795 40 24.501062215477997 25.113657056145676 27.4040971168437 22.981183611532625 41 22.031714719271626 25.427769347496206 26.661911987860393 25.878603945371776 42 22.907435508345976 26.463732928679818 26.116236722306525 24.512594840667678 43 22.98649468892261 24.508042488619118 28.115174506828527 24.390288315629743 44 23.46722306525038 26.139757207890746 26.36176024279211 24.031259484066766 45 23.76934749620637 24.659635811836115 27.17996965098634 24.391047040971166 46 24.0247344461305 25.79423368740516 25.899544764795145 24.281487101669196 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 4418.0 1 3706.0 2 2994.0 3 4739.5 4 6485.0 5 4553.5 6 2622.0 7 2622.0 8 2467.5 9 2313.0 10 2321.5 11 2330.0 12 2370.0 13 2410.0 14 2296.5 15 2183.0 16 2095.5 17 2008.0 18 1984.5 19 1961.0 20 1961.0 21 2218.0 22 2475.0 23 2926.5 24 3378.0 25 4114.0 26 4850.0 27 5207.0 28 5564.0 29 7192.5 30 8821.0 31 8821.0 32 10569.0 33 12317.0 34 13246.5 35 14176.0 36 15611.5 37 17047.0 38 19409.0 39 21771.0 40 25366.5 41 28962.0 42 32215.5 43 35469.0 44 35469.0 45 39616.5 46 43764.0 47 48590.5 48 53417.0 49 55588.5 50 57760.0 51 54641.5 52 51523.0 53 46840.0 54 42157.0 55 39754.0 56 37351.0 57 37351.0 58 36194.0 59 35037.0 60 33758.0 61 32479.0 62 31578.0 63 30677.0 64 27985.5 65 25294.0 66 22499.5 67 19705.0 68 17475.5 69 15246.0 70 15246.0 71 13130.0 72 11014.0 73 9176.0 74 7338.0 75 6222.5 76 5107.0 77 3994.0 78 2881.0 79 2349.0 80 1817.0 81 1817.0 82 1485.5 83 1154.0 84 807.5 85 461.0 86 295.5 87 130.0 88 99.0 89 68.0 90 43.5 91 19.0 92 24.0 93 29.0 94 29.0 95 21.0 96 13.0 97 8.5 98 4.0 99 2.5 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 46 659000.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 32.26293325980426 #Duplication Level Percentage of deduplicated Percentage of total 1 73.89504875870762 23.84071026332165 2 9.134252457513545 5.89395554829925 3 3.488042248336915 3.3760342279641447 4 1.9269939590023406 2.4868190996535393 5 1.303267249669914 2.102361214789454 6 0.9828280671864065 1.9025349802498468 7 0.7927898100137653 1.7904407310668904 8 0.6998621701916149 1.8063685190363072 9 0.6015256763587142 1.7466284475377833 >10 6.952004508176795 47.254220395909705 >50 0.18324189598170412 3.7008930576478702 >100 0.035892742510770057 2.2578053162668277 >500 0.0033059104944130314 0.6815469820260169 >1k 9.445458555465804E-4 1.159681216230721 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 4136 0.6276176024279211 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3475 0.5273141122913505 No Hit GCTGTCTCTTATACACATCTGACGCATAGAGCCTCGTATGCCGTCT 721 0.10940819423368742 No Hit GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 705 0.10698027314112292 No Hit CCTGTCTCTTATACACATCTGACGCATAGAGCCTCGTATGCCGTCT 670 0.10166919575113809 No Hit CTGTCTCTTATACACATCTGACGCATAGAGCCTCGTATGCCGTCTT 666 0.10106221547799697 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.11244309559939301 0.0 2 0.0 0.0 0.0 0.4543247344461305 0.0 3 0.0 0.0 0.0 0.65402124430956 0.0 4 0.0 0.0 0.0 0.8908952959028832 0.0 5 0.0 0.0 0.0 1.4918057663125948 0.0 6 0.0 0.0 0.0 2.3626707132018208 0.0 7 0.0 0.0 0.0 3.001820940819423 0.0 8 0.0 0.0 0.0 4.284370257966616 0.0 9 0.0 0.0 0.0 4.915022761760243 0.0 10 0.0 0.0 0.0 5.944916540212443 0.0 11 0.0 0.0 0.0 6.92185128983308 0.0 12 0.0 0.0 0.0 7.739453717754173 0.0 13 0.0 0.0 0.0 8.120182094081942 0.0 14 0.0 0.0 0.0 8.303186646433991 0.0 15 0.0 0.0 0.0 8.539453717754173 0.0 16 0.0 0.0 0.0 9.01380880121396 0.0 17 0.0 0.0 0.0 9.535204855842185 0.0 18 0.0 0.0 0.0 10.257056145675266 0.0 19 0.0 0.0 0.0 10.540971168437025 0.0 20 0.0 0.0 0.0 10.876934749620638 0.0 21 0.0 0.0 0.0 11.225493171471927 0.0 22 0.0 0.0 0.0 11.577389984825492 0.0 23 1.5174506828528073E-4 0.0 0.0 11.95751138088012 0.0 24 1.5174506828528073E-4 0.0 0.0 12.259787556904401 0.0 25 1.5174506828528073E-4 0.0 0.0 12.523520485584218 0.0 26 1.5174506828528073E-4 0.0 0.0 12.7649468892261 0.0 27 1.5174506828528073E-4 0.0 0.0 13.039150227617602 0.0 28 1.5174506828528073E-4 0.0 0.0 13.302276176024279 0.0 29 1.5174506828528073E-4 0.0 0.0 13.57784522003035 0.0 30 1.5174506828528073E-4 0.0 0.0 13.933383915022763 0.0 31 1.5174506828528073E-4 0.0 0.0 14.202883156297421 0.0 32 1.5174506828528073E-4 0.0 0.0 14.49256449165402 0.0 33 1.5174506828528073E-4 0.0 0.0 14.787556904400606 0.0 34 1.5174506828528073E-4 0.0 0.0 15.06236722306525 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TACCCGT 25 7.7910314E-5 40.0 34 CAAACGC 25 7.7910314E-5 40.0 34 GTCGATA 20 0.0012553791 40.0 30 ACCGAAT 20 0.0012553791 40.0 25 CGTTCGA 25 7.7910314E-5 40.0 14 GCCGATA 40 1.9261279E-8 40.0 9 GTCCCGA 20 0.0012553791 40.0 38 TTCATCG 20 0.0012553791 40.0 14 GACGATT 20 0.0012553791 40.0 28 CGGTATG 45 1.2205419E-9 40.0 6 CACCGAA 30 4.8643487E-6 40.0 24 CCCGGAT 30 4.8643487E-6 40.0 19 GTGCGAT 20 0.0012553791 40.0 17 TGTCGAT 20 0.0012553791 40.0 29 GCCCGTT 20 0.0012553791 40.0 33 ATACAAC 20 0.0012553791 40.0 12 TATCCGG 35 3.0537376E-7 40.0 2 ACGGTCT 40 1.9261279E-8 40.0 30 CGGGTAT 155 0.0 38.709675 6 CATATCA 100 0.0 38.0 29 >>END_MODULE