SRR3553808_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553808_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1022724
Sequences flagged as poor quality	0
Sequence length	46
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3754	0.3670589523664254	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3486	0.34085442406749034	No Hit
ATTCCTCCAGATCTCTACGCATTTCACCGCTACACCTGGAATTCTA	1987	0.19428506615665614	No Hit
CCTGTCTCTTATACACATCTGACGCGGTCCAATTCGTATGCCGTCT	1571	0.1536093804389063	No Hit
TATGAAAACTATGCCCTCGTGTACTCCTGCACCACCTTCTTCTGGC	1517	0.14832936354285223	No Hit
GCTGTCTCTTATACACATCTGACGCGGTCCAATTCGTATGCCGTCT	1258	0.12300483805992622	No Hit
CTGTCTCTTATACACATCTGACGCGGTCCAATTCGTATGCCGTCTT	1101	0.10765367782510236	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TACGCCC	20	0.0012557037	40.0	19
GTTAACG	45	1.2205419E-9	40.0	1
TATTACG	40	1.9279469E-8	40.0	1
ACGCATT	285	0.0	38.596493	17
TACGCAT	295	0.0	37.966103	16
CTACGCA	295	0.0	37.966103	15
GCGATTA	180	0.0	36.666668	9
ACACGAC	390	0.0	36.410255	26
CGCATTT	300	0.0	36.0	18
CATAGCG	50	3.423338E-9	36.0	1
ACGCTAG	50	3.423338E-9	36.0	1
TTAACGG	145	0.0	35.86207	2
CGTACGG	90	0.0	35.555557	2
CACGACC	400	0.0	35.5	27
GCACTTA	1090	0.0	35.045868	36
AACGAGT	40	8.69868E-7	35.0	33
TCGTAAG	40	8.69868E-7	35.0	1
TATAGCG	40	8.69868E-7	35.0	1
ACGACCA	410	0.0	34.634148	28
CGTTTTT	1995	0.0	34.586464	1