SRR3553807_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553807_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	468876
Sequences flagged as poor quality	0
Sequence length	46
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2834	0.6044241974423942	No Hit
ATTCCTCCAGATCTCTACGCATTTCACCGCTACACCTGGAATTCTA	2054	0.4380689137426526	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1127	0.24036205734565214	No Hit
CCTGTCTCTTATACACATCTGACGCTAGAGGTGTCGTATGCCGTCT	1062	0.22649911703734038	No Hit
GCTGTCTCTTATACACATCTGACGCTAGAGGTGTCGTATGCCGTCT	989	0.2109299686910825	No Hit
CTGTCTCTTATACACATCTGACGCTAGAGGTGTCGTATGCCGTCTT	843	0.17979167199856677	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	649	0.13841612707837467	No Hit
GAATCTGTCTCTTATACACATCTGACGCTAGAGGTGTCGTATGCCG	556	0.11858145863725164	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GGTACAA	40	1.924127E-8	40.0	8
CTCGTAA	25	7.787585E-5	40.0	33
ACGTTGG	30	4.861342E-6	40.0	2
TCCGAGT	20	0.0012550087	40.0	12
GCGTTAG	20	0.0012550087	40.0	1
ACGGGAT	120	0.0	40.0	5
CCGTCAA	20	0.0012550087	40.0	13
TCGGCAA	20	0.0012550087	40.0	40
CGTTAGG	35	3.0512092E-7	40.0	2
GTTACGG	30	4.861342E-6	40.0	2
CTACGTC	20	0.0012550087	40.0	14
CATAGCG	40	1.924127E-8	40.0	1
TTGCGTC	30	4.861342E-6	40.0	23
GTCAACG	20	0.0012550087	40.0	1
CGAGCTA	20	0.0012550087	40.0	4
TCACTAG	20	0.0012550087	40.0	38
TCGTAAG	40	1.924127E-8	40.0	1
AACTCGT	20	0.0012550087	40.0	12
GCGTGCA	25	7.787585E-5	40.0	32
CGCACAT	20	0.0012550087	40.0	22