SRR3553806_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553806_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	957914
Sequences flagged as poor quality	0
Sequence length	46
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4313	0.4502491872965631	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3507	0.36610802222328936	No Hit
GAATCTGTCTCTTATACACATCTGACGCGTCAAAGGTCGTATGCCG	1791	0.18696876755115804	No Hit
ATTCCTCCAGATCTCTACGCATTTCACCGCTACACCTGGAATTCTA	1487	0.1552331420148364	No Hit
GCTGTCTCTTATACACATCTGACGCGTCAAAGGTCGTATGCCGTCT	1370	0.14301910192355474	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGTCAAAGGTCG	1220	0.1273600761655013	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGTCAAAGGTCGTA	1190	0.1242282710138906	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGA	1075	0.1122230179327163	No Hit
CCTGTCTCTTATACACATCTGACGCGTCAAAGGTCGTATGCCGTCT	1050	0.10961318030637404	No Hit
CTGTCTCTTATACACATCTGACGCGTCAAAGGTCGTATGCCGTCTT	1012	0.10564622711433384	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TGTAACG	30	4.8666625E-6	40.000004	1
TTTAGCG	80	0.0	40.0	1
CAATACG	20	0.001255664	40.0	1
TACGTTA	20	0.001255664	40.0	30
ACGCATT	290	0.0	37.931038	17
TACGCAT	290	0.0	37.931038	16
CTACGCA	290	0.0	37.931038	15
CGCATTT	300	0.0	36.666668	18
TGTTACG	50	3.423338E-9	36.0	1
TACTCGA	50	3.423338E-9	36.0	32
CGACGGT	45	5.440961E-8	35.555557	28
TCGACAC	45	5.440961E-8	35.555557	34
TTCACGG	85	0.0	35.29412	2
CGTTCGG	40	8.697916E-7	35.0	2
TCTACGC	320	0.0	35.0	14
CGTTTTT	1935	0.0	34.9354	1
TCACCGC	310	0.0	34.83871	24
GCTACGA	185	0.0	34.594593	10
AACGGGA	550	0.0	34.545456	4
CGGGCTA	110	0.0	34.545452	6