##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3553806_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 957914 Sequences flagged as poor quality 0 Sequence length 46 %GC 49 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.685324569846564 31.0 31.0 34.0 30.0 34.0 2 31.850427073829174 31.0 31.0 34.0 30.0 34.0 3 31.77993431560662 31.0 31.0 34.0 30.0 34.0 4 35.56784638286944 37.0 35.0 37.0 33.0 37.0 5 33.659402618606684 37.0 35.0 37.0 30.0 37.0 6 34.48534419582551 37.0 35.0 37.0 30.0 37.0 7 35.42372279766242 37.0 35.0 37.0 32.0 37.0 8 35.50276642788392 37.0 35.0 37.0 33.0 37.0 9 37.263996559190076 39.0 37.0 39.0 34.0 39.0 10 36.673287998713874 39.0 37.0 39.0 32.0 39.0 11 36.437792954273554 39.0 35.0 39.0 32.0 39.0 12 36.62855224999321 39.0 35.0 39.0 32.0 39.0 13 33.12145140377946 38.0 35.0 39.0 10.0 39.0 14 35.36970646634249 39.0 35.0 41.0 18.0 41.0 15 36.75128664994978 39.0 35.0 41.0 30.0 41.0 16 37.3519439114576 39.0 36.0 41.0 32.0 41.0 17 37.52023459308456 39.0 36.0 41.0 32.0 41.0 18 37.61355612299225 39.0 36.0 41.0 33.0 41.0 19 37.59935025482454 39.0 36.0 41.0 32.0 41.0 20 37.60035556427821 39.0 36.0 41.0 32.0 41.0 21 37.52321189584869 39.0 36.0 41.0 32.0 41.0 22 37.51746816520063 39.0 36.0 41.0 32.0 41.0 23 37.392982042229264 39.0 36.0 41.0 32.0 41.0 24 37.35932557619995 39.0 36.0 41.0 32.0 41.0 25 37.15548995003727 39.0 35.0 41.0 31.0 41.0 26 37.11426808669672 39.0 35.0 40.0 31.0 41.0 27 36.71456623454715 39.0 35.0 40.0 31.0 41.0 28 36.74932092024962 39.0 35.0 40.0 31.0 41.0 29 36.801830853291634 39.0 35.0 40.0 31.0 41.0 30 36.337942654559804 39.0 35.0 40.0 30.0 41.0 31 36.43404731531223 39.0 35.0 40.0 30.0 41.0 32 36.39264171940279 39.0 35.0 40.0 30.0 41.0 33 36.313512486507136 39.0 35.0 40.0 30.0 41.0 34 36.25638000906136 39.0 35.0 40.0 30.0 41.0 35 36.17476516681038 38.0 35.0 40.0 30.0 41.0 36 36.061309261582984 38.0 35.0 40.0 29.0 41.0 37 35.987766125142755 38.0 35.0 40.0 29.0 41.0 38 35.867562223748685 38.0 35.0 40.0 29.0 41.0 39 35.80606505385661 38.0 35.0 40.0 29.0 41.0 40 35.689823929914375 38.0 35.0 40.0 28.0 41.0 41 35.57086126729539 38.0 34.0 40.0 28.0 41.0 42 35.49764592646104 38.0 34.0 40.0 28.0 41.0 43 35.39416899638172 38.0 34.0 40.0 27.0 41.0 44 35.31010925824239 38.0 34.0 40.0 27.0 41.0 45 35.245065840983635 38.0 34.0 40.0 27.0 41.0 46 34.158501702658064 37.0 33.0 40.0 23.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 1.0 8 3.0 9 15.0 10 28.0 11 24.0 12 19.0 13 11.0 14 17.0 15 32.0 16 70.0 17 139.0 18 275.0 19 521.0 20 891.0 21 1418.0 22 2231.0 23 3309.0 24 4675.0 25 6254.0 26 8561.0 27 11353.0 28 14650.0 29 18445.0 30 22804.0 31 29481.0 32 38150.0 33 50571.0 34 70602.0 35 88494.0 36 106536.0 37 142216.0 38 175203.0 39 160915.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 33.059126393392305 23.92187607655802 22.7400372058452 20.27896032420447 2 26.127815231847535 27.29681370143875 23.16168257275705 23.41368849395666 3 28.163697367404588 26.551757255870566 23.801510365231117 21.483035011493726 4 25.264689732063626 28.125593738059994 22.524360224404276 24.0853563054721 5 20.869096808272978 34.718461156220705 19.808563190432544 24.603878845073776 6 20.284284392962206 40.13763239706278 21.645784485872426 17.93229872410258 7 82.67005180005721 5.580146025634869 7.702361589871325 4.047440584436599 8 82.07573957578656 5.767741154216349 7.514557674279737 4.641961595717361 9 75.4408015750892 7.530529880552951 10.255409149464358 6.773259394893487 10 34.53483298083127 27.911795839710035 17.856926613453815 19.69644456600488 11 28.437103957140202 27.467601475706587 23.590009123992342 20.50528544316087 12 24.225556782759202 24.221589829567165 30.29363805101502 21.259215336658617 13 21.84277502990874 30.159701184031135 28.90729230390202 19.090231482158107 14 21.80853396025113 27.766793261190465 28.10826441622108 22.316408362337327 15 20.913150867405633 26.496115517676955 30.80099048557595 21.789743129341467 16 23.217115523940564 25.352902243833995 29.24093394605361 22.18904828617183 17 22.63272068265001 25.7929208676353 27.32291207770217 24.25144637201252 18 23.888052580920625 25.38745649400677 27.507792975152256 23.21669794992035 19 24.894823543658408 27.760112076867028 25.791250571554443 21.55381380792013 20 27.270506538165222 25.256233858154282 25.287656303175442 22.185603300505054 21 26.786955822756532 27.104312078119747 25.452702434665326 20.656029664458398 22 24.468898043039356 24.93104808991204 25.940742070791323 24.65931179625728 23 23.63166213250876 26.693628029238532 26.54612000659767 23.128589831655034 24 23.253235676689137 25.46585601630209 27.64193862914625 23.638969677862523 25 24.267001004265516 27.224573395941597 25.158417143918975 23.350008455873912 26 23.149572926170826 26.62671179249912 26.03093805915771 24.192777222172346 27 23.877300049900096 25.71932344657245 26.894063558941617 23.50931294458584 28 22.382176270521153 26.978204724014894 27.165695459091317 23.47392354637264 29 23.691062036884315 27.620642354115297 25.034397659915193 23.653897949085202 30 24.242572924082957 26.38472764778467 26.404771200754972 22.967928227377403 31 24.024494892025796 26.912958783356334 24.94702029618525 24.115526028432615 32 24.514100430727602 27.60341742578144 25.00433233045973 22.878149813031232 33 23.324954014661024 27.52762774111246 24.827072158878565 24.320346085347953 34 22.645039116246345 28.001678647561263 25.63820969314573 23.715072543046663 35 24.578928797365943 26.662205584217375 25.31845238716628 23.440413231250403 36 24.87363166213251 28.543898512810127 24.012594032449677 22.56987579260769 37 23.82416375582777 28.71917520779527 25.254981136093633 22.201679900283324 38 23.79514236142284 28.60361159770084 24.824253534242114 22.77699250663421 39 24.802957259211162 26.988226500500044 24.216578941324588 23.99223729896421 40 24.84283557814167 26.361447896157692 27.815858208565697 20.97985831713494 41 23.06939871428959 26.333992404328573 26.645920197428996 23.95068868395284 42 24.02512125305612 26.315932327954282 26.2994381541558 23.359508264833796 43 23.668304252782608 24.617032426710537 28.058990681835738 23.655672638671113 44 23.751088302290185 25.697922778036443 26.20214340744576 24.348845512227612 45 23.64544207517585 25.139104345484043 26.44538027422086 24.770073305119247 46 24.195595846808796 26.380551907582518 25.492893934110995 23.93095831149769 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 4027.0 1 3478.0 2 2929.0 3 5722.0 4 8515.0 5 5687.5 6 2860.0 7 2860.0 8 2678.5 9 2497.0 10 2590.0 11 2683.0 12 2600.0 13 2517.0 14 2505.0 15 2493.0 16 2515.5 17 2538.0 18 2526.0 19 2514.0 20 2514.0 21 2780.5 22 3047.0 23 3804.0 24 4561.0 25 5573.5 26 6586.0 27 7502.0 28 8418.0 29 10839.0 30 13260.0 31 13260.0 32 14998.0 33 16736.0 34 19212.5 35 21689.0 36 24947.5 37 28206.0 38 30654.0 39 33102.0 40 37436.0 41 41770.0 42 48030.5 43 54291.0 44 54291.0 45 60396.5 46 66502.0 47 74468.5 48 82435.0 49 84018.0 50 85601.0 51 81899.0 52 78197.0 53 73350.5 54 68504.0 55 64204.5 56 59905.0 57 59905.0 58 58471.0 59 57037.0 60 53612.5 61 50188.0 62 45739.0 63 41290.0 64 36652.5 65 32015.0 66 27873.5 67 23732.0 68 20202.5 69 16673.0 70 16673.0 71 14308.0 72 11943.0 73 9919.5 74 7896.0 75 6368.5 76 4841.0 77 3881.5 78 2922.0 79 2284.5 80 1647.0 81 1647.0 82 1194.5 83 742.0 84 548.0 85 354.0 86 241.5 87 129.0 88 100.5 89 72.0 90 49.5 91 27.0 92 19.0 93 11.0 94 11.0 95 10.0 96 9.0 97 5.5 98 2.0 99 1.5 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 46 957914.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 35.08437247028004 #Duplication Level Percentage of deduplicated Percentage of total 1 77.04783489847473 27.03174937606729 2 8.670127043355807 6.083719331074859 3 3.300953710949408 3.4743566850630647 4 1.8217376306908943 2.556580863131392 5 1.1680037180423757 2.0489338745235326 6 0.816694884443555 1.7191936512233996 7 0.6159436567091152 1.5126997670882232 8 0.47658242557015 1.3376476265194126 9 0.4287531680565979 1.353828226131923 >10 5.369717492142363 42.665899669367164 >50 0.24180133656551758 5.1947834281476934 >100 0.035456279652449796 2.36566775618122 >500 0.0034875029165783557 0.8180575150930516 >1k 0.0029062524304819632 1.8368822303878005 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 4313 0.4502491872965631 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 3507 0.36610802222328936 No Hit GAATCTGTCTCTTATACACATCTGACGCGTCAAAGGTCGTATGCCG 1791 0.18696876755115804 No Hit ATTCCTCCAGATCTCTACGCATTTCACCGCTACACCTGGAATTCTA 1487 0.1552331420148364 No Hit GCTGTCTCTTATACACATCTGACGCGTCAAAGGTCGTATGCCGTCT 1370 0.14301910192355474 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCGTCAAAGGTCG 1220 0.1273600761655013 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCGTCAAAGGTCGTA 1190 0.1242282710138906 No Hit GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGA 1075 0.1122230179327163 No Hit CCTGTCTCTTATACACATCTGACGCGTCAAAGGTCGTATGCCGTCT 1050 0.10961318030637404 No Hit CTGTCTCTTATACACATCTGACGCGTCAAAGGTCGTATGCCGTCTT 1012 0.10564622711433384 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 1.0439350505368959E-4 0.0 0.0 0.1221404009128168 0.0 2 1.0439350505368959E-4 0.0 0.0 0.528335529076723 0.0 3 1.0439350505368959E-4 0.0 0.0 0.750276120820867 0.0 4 1.0439350505368959E-4 0.0 0.0 1.0387153752842113 0.0 5 1.0439350505368959E-4 0.0 0.0 1.843902479763319 0.0 6 1.0439350505368959E-4 0.0 0.0 2.7614169956801966 0.0 7 1.0439350505368959E-4 0.0 0.0 3.409074301033287 0.0 8 1.0439350505368959E-4 0.0 0.0 4.556567708583443 0.0 9 1.0439350505368959E-4 0.0 0.0 5.033750420183858 0.0 10 1.0439350505368959E-4 0.0 0.0 5.960033990525245 0.0 11 1.0439350505368959E-4 0.0 0.0 6.782759203853373 0.0 12 1.0439350505368959E-4 0.0 0.0 7.581160730503991 0.0 13 1.0439350505368959E-4 0.0 0.0 7.917412210281925 0.0 14 1.0439350505368959E-4 0.0 0.0 8.076507911983748 0.0 15 1.0439350505368959E-4 0.0 0.0 8.312124052889926 0.0 16 1.0439350505368959E-4 0.0 0.0 8.799850508500763 0.0 17 1.0439350505368959E-4 0.0 0.0 9.346768081477043 0.0 18 1.0439350505368959E-4 0.0 0.0 10.044012301730636 0.0 19 1.0439350505368959E-4 0.0 0.0 10.358027964932134 0.0 20 1.0439350505368959E-4 0.0 0.0 10.69574095378082 0.0 21 2.0878701010737917E-4 0.0 0.0 11.0573600552868 0.0 22 2.0878701010737917E-4 0.0 0.0 11.4265998826617 0.0 23 2.0878701010737917E-4 0.0 0.0 11.825696252481956 0.0 24 2.0878701010737917E-4 0.0 0.0 12.139920702693562 0.0 25 2.0878701010737917E-4 0.0 0.0 12.418651361186912 0.0 26 2.0878701010737917E-4 0.0 0.0 12.671910004447163 0.0 27 2.0878701010737917E-4 0.0 0.0 12.96807437828448 0.0 28 2.0878701010737917E-4 0.0 0.0 13.242211722555469 0.0 29 2.0878701010737917E-4 0.0 0.0 13.554974663696324 0.0 30 2.0878701010737917E-4 0.0 0.0 13.947807423213357 0.0 31 2.0878701010737917E-4 0.0 0.0 14.249504652818521 0.0 32 2.0878701010737917E-4 0.0 0.0 14.554438081080347 0.0 33 2.0878701010737917E-4 0.0 0.0 14.852899112028846 0.0 34 2.0878701010737917E-4 0.0 0.0 15.148332731330788 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TGTAACG 30 4.8666625E-6 40.000004 1 TTTAGCG 80 0.0 40.0 1 CAATACG 20 0.001255664 40.0 1 TACGTTA 20 0.001255664 40.0 30 ACGCATT 290 0.0 37.931038 17 TACGCAT 290 0.0 37.931038 16 CTACGCA 290 0.0 37.931038 15 CGCATTT 300 0.0 36.666668 18 TGTTACG 50 3.423338E-9 36.0 1 TACTCGA 50 3.423338E-9 36.0 32 CGACGGT 45 5.440961E-8 35.555557 28 TCGACAC 45 5.440961E-8 35.555557 34 TTCACGG 85 0.0 35.29412 2 CGTTCGG 40 8.697916E-7 35.0 2 TCTACGC 320 0.0 35.0 14 CGTTTTT 1935 0.0 34.9354 1 TCACCGC 310 0.0 34.83871 24 GCTACGA 185 0.0 34.594593 10 AACGGGA 550 0.0 34.545456 4 CGGGCTA 110 0.0 34.545452 6 >>END_MODULE