SRR3553804_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553804_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	402930
Sequences flagged as poor quality	0
Sequence length	46
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2043	0.5070359615814161	No Hit
ATTCCTCCAGATCTCTACGCATTTCACCGCTACACCTGGAATTCTA	1662	0.4124785942967761	No Hit
GAATCTGTCTCTTATACACATCTGACGCGGTAAGACTCGTATGCCG	1572	0.3901422083240265	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGGTAAGACTCGTA	1251	0.3104757650212196	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGGTAAGACTCG	1220	0.30278212096393914	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1158	0.2873948328493783	No Hit
GCTGTCTCTTATACACATCTGACGCGGTAAGACTCGTATGCCGTCT	809	0.20077929168838257	No Hit
CCTGTCTCTTATACACATCTGACGCGGTAAGACTCGTATGCCGTCT	555	0.13774104683195593	No Hit
CTGTCTCTTATACACATCTGACGCGGTAAGACTCGTATGCCGTCTT	552	0.13699650063286425	No Hit
TATGAAAACTATGCCCTCGTGTACTCCTGCACCACCTTCTTCTGGC	447	0.1109373836646564	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	443	0.10994465539920086	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTAGCGA	20	0.0012547983	40.000004	1
CGCATCG	20	0.0012547983	40.000004	21
CCATGCG	20	0.0012547983	40.000004	1
GGTATAC	20	0.0012547983	40.000004	8
GCATCGC	20	0.0012547983	40.000004	22
CTCACGA	25	7.7856326E-5	40.0	24
TACGCAT	135	0.0	40.0	16
CATAGCG	25	7.7856326E-5	40.0	1
CGTACGG	25	7.7856326E-5	40.0	2
TAATGGC	25	7.7856326E-5	40.0	15
TCGCGAG	35	3.0497904E-7	40.0	1
CTACGCA	150	0.0	37.333332	15
ACGCATT	145	0.0	37.241383	17
TCGTTCA	70	0.0	37.142857	16
TAGGGTA	130	0.0	36.923077	5
TTACACG	190	0.0	36.842106	34
GCACTTA	430	0.0	36.744183	36
TACGCGG	55	2.1645974E-10	36.36364	2
CACCGCT	155	0.0	36.129032	25
GTCTTAC	205	0.0	36.09756	31