SRR3553788_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553788_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1518396
Sequences flagged as poor quality	0
Sequence length	46
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	10983	0.7233290920155216	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3491	0.2299136720591993	No Hit
CCTGTCTCTTATACACATCTGACGCCCTGTTCTTCGTATGCCGTCT	3196	0.21048527525098856	No Hit
GAATCTGTCTCTTATACACATCTGACGCCCTGTTCTTCGTATGCCG	2310	0.152134225854125	No Hit
GCTGTCTCTTATACACATCTGACGCCCTGTTCTTCGTATGCCGTCT	2275	0.14982916182603223	No Hit
CTGTCTCTTATACACATCTGACGCCCTGTTCTTCGTATGCCGTCTT	2185	0.14390185432522215	No Hit
CGCTGTCTCTTATACACATCTGACGCCCTGTTCTTCGTATGCCGTC	2121	0.1396868801024239	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCCCTGTTCTTCGTATGCC	2045	0.13468159821285092	No Hit
CGTTTTCTGTCTCTTATACACATCTGACGCCCTGTTCTTCGTATGC	1804	0.11880958590512619	No Hit
CGTTCTGTCTCTTATACACATCTGACGCCCTGTTCTTCGTATGCCG	1643	0.10820629137589931	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTTATC	20	0.0012558961	40.0	1
ACGCTAG	35	3.0572483E-7	40.0	1
TATAGCG	60	0.0	40.0	1
TACGTAG	60	0.0	40.0	1
CGTTTTT	4980	0.0	38.07229	1
GCGAAGT	50	3.426976E-9	36.000004	9
GCTACGA	100	0.0	36.000004	10
CCGCACG	45	5.4444172E-8	35.555557	1
AACGGGA	1045	0.0	35.4067	4
GCGATCG	85	0.0	35.29412	9
CGTAAGG	335	0.0	35.22388	2
GCGTTAG	80	0.0	35.0	1
CCGTAAG	70	1.8189894E-12	34.285713	1
TCGATAG	100	0.0	34.000004	1
TGCACGG	390	0.0	33.846153	2
GCGATCA	285	0.0	33.68421	9
CGCACGG	410	0.0	33.65854	2
TGGGCGA	1245	0.0	33.5743	6
ACGGGAA	1205	0.0	33.52697	5
TAGGGCG	640	0.0	33.4375	5