##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3553786_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1335364 Sequences flagged as poor quality 0 Sequence length 46 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.602353365823852 31.0 31.0 34.0 30.0 34.0 2 31.756959151212705 31.0 31.0 34.0 30.0 34.0 3 31.714472608217683 31.0 31.0 34.0 30.0 34.0 4 35.51616712746487 37.0 35.0 37.0 33.0 37.0 5 33.6316802010538 37.0 35.0 37.0 30.0 37.0 6 34.421512037167396 37.0 35.0 37.0 30.0 37.0 7 35.39259183263889 37.0 35.0 37.0 32.0 37.0 8 35.39975092933462 37.0 35.0 37.0 33.0 37.0 9 37.19982042349502 39.0 37.0 39.0 34.0 39.0 10 36.56497554224916 38.0 35.0 39.0 32.0 39.0 11 36.335492794474014 38.0 35.0 39.0 32.0 39.0 12 36.650597140554936 39.0 35.0 39.0 32.0 39.0 13 33.10675815732639 38.0 35.0 39.0 10.0 39.0 14 35.37948005188098 39.0 35.0 40.0 18.0 41.0 15 36.68207994224796 39.0 35.0 40.0 30.0 41.0 16 37.31351901054694 39.0 36.0 40.0 32.0 41.0 17 37.46515481921034 39.0 36.0 40.0 32.0 41.0 18 37.55054501993464 39.0 36.0 40.0 32.0 41.0 19 37.57525214098927 39.0 36.0 41.0 32.0 41.0 20 37.56108971037111 39.0 36.0 41.0 32.0 41.0 21 37.534413088865655 39.0 36.0 41.0 32.0 41.0 22 37.581219802241186 39.0 36.0 41.0 32.0 41.0 23 37.471770992778 39.0 36.0 40.0 32.0 41.0 24 37.46116414700411 39.0 36.0 41.0 32.0 41.0 25 37.2850443774132 39.0 36.0 40.0 32.0 41.0 26 37.25692095937887 39.0 36.0 40.0 32.0 41.0 27 36.885093502595545 39.0 36.0 40.0 31.0 41.0 28 36.92458685422102 39.0 35.0 40.0 31.0 41.0 29 37.00539478374436 39.0 36.0 40.0 31.0 41.0 30 36.598758840286244 39.0 35.0 40.0 30.0 41.0 31 36.737659544513704 39.0 35.0 40.0 30.0 41.0 32 36.71532780575184 39.0 35.0 40.0 30.0 41.0 33 36.69072402730641 39.0 35.0 40.0 30.0 41.0 34 36.729978492755535 39.0 35.0 40.0 30.0 41.0 35 36.666817437043385 39.0 35.0 40.0 30.0 41.0 36 36.56266680845073 39.0 35.0 40.0 30.0 41.0 37 36.55848143277788 39.0 35.0 40.0 30.0 41.0 38 36.470748799578246 39.0 35.0 40.0 30.0 41.0 39 36.3628755904757 39.0 35.0 40.0 30.0 41.0 40 36.25145877828068 39.0 35.0 40.0 30.0 41.0 41 36.046967718165234 39.0 35.0 40.0 29.0 41.0 42 36.00872046872613 38.0 35.0 40.0 29.0 41.0 43 35.902842221296964 38.0 35.0 40.0 29.0 41.0 44 35.88302515269245 38.0 35.0 40.0 29.0 41.0 45 35.88065051925917 38.0 35.0 40.0 29.0 41.0 46 34.63012257332083 37.0 33.0 40.0 24.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 6 1.0 7 1.0 8 3.0 9 13.0 10 27.0 11 27.0 12 24.0 13 15.0 14 16.0 15 22.0 16 63.0 17 115.0 18 247.0 19 456.0 20 845.0 21 1567.0 22 2462.0 23 3721.0 24 5272.0 25 7164.0 26 10132.0 27 13489.0 28 17707.0 29 22812.0 30 29899.0 31 39871.0 32 52735.0 33 69683.0 34 94886.0 35 120257.0 36 150300.0 37 203576.0 38 258919.0 39 229037.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 35.67559107479309 21.89897286432763 21.73954067954505 20.685895381334227 2 23.841139943865493 29.76169793404645 23.126054019727952 23.271108102360106 3 25.49087739372935 29.83598479515698 23.386207805512203 21.28693000560147 4 23.577541404441035 27.68278911218215 25.519259168286702 23.220410315090117 5 22.214018050509075 33.662881431579706 20.264661919896 23.858438598015223 6 19.160693264158688 40.45481232083537 22.82426364646643 17.560230768539515 7 80.97282838237363 4.8025856620367176 10.03411803822778 4.1904679173618575 8 79.33177770255901 6.598350711865828 8.383856386723021 5.686015198852148 9 72.37749407652146 7.481630476783859 11.297069563055466 8.843805883639218 10 31.02105493333653 30.251601810442697 19.542386944683248 19.18495631153753 11 24.59172180768689 26.419987359251863 28.529000332493617 20.459290500567636 12 21.411016022597586 22.81348006985361 33.01579194886188 22.75971195868692 13 19.817143490464023 29.667266752735582 32.78147381537917 17.734115941421216 14 20.557091549570007 27.99641146533829 29.616044763824696 21.83045222126701 15 18.56362759517255 26.901878439137196 34.67099607298085 19.863497892709404 16 20.496658588968998 26.371311492596778 30.42196734373549 22.710062574698732 17 20.434053935855694 26.879936856168058 29.425609796280266 23.260399411695985 18 20.897223528565995 26.665463499090887 29.611252063107884 22.826060909235235 19 21.642114060286183 28.330402796540866 27.41282526711818 22.61465787605477 20 23.073034768048263 26.625399516536312 28.848763333443166 21.452802381972255 21 23.566008968341215 28.628973074008286 28.436740843695052 19.368277113955447 22 21.619348731881345 25.3449246797128 27.667212834852517 25.36851375355334 23 20.37422006284429 28.275661168041072 28.43696550154115 22.913153267573485 24 21.326394900566438 25.411573174055913 29.08270703718237 24.17932488819528 25 20.601723574995283 29.262208656216583 26.962011855943395 23.174055912844736 26 19.59061349564613 26.93482825656525 29.598521451828862 23.876036795959756 27 22.228021722916 26.61162050197549 27.51684184986266 23.64351592524585 28 19.52194308068811 26.86024185165992 29.725977336516486 23.89183773113548 29 21.578910319583276 24.53241213631639 28.99621376643372 24.892463777666613 30 21.123903295281288 25.41696496236232 29.78581120952789 23.6733205328285 31 20.66485242974949 25.230573836047697 27.138218493234806 26.966355240968003 32 20.52444127593675 25.277377553985282 28.637734730006198 25.56044644007177 33 19.316006721762754 24.640023244598478 27.03068227090142 29.01328776273735 34 19.296761032946822 23.676091312930406 28.97831602469439 28.048831629428378 35 18.806857156550574 23.05393885112973 30.074346769869486 28.064857222450208 36 19.31937658945426 26.138940393780274 28.93623012152492 25.60545289524055 37 18.976324058458967 25.77424582361064 29.279806854161112 25.969623263769282 38 18.749269862000173 25.838348195697954 27.756851315446575 27.655530626855303 39 20.667548323902697 24.216992520391443 26.960589022918096 28.154870132787764 40 20.656015887802877 23.37055664223388 31.73763857644807 24.235788893515174 41 18.734292672260146 26.34390323537253 29.212634158177096 25.70916993419023 42 20.093697299013602 25.29325337510971 31.78017379530974 22.832875530566945 43 20.780700992388592 25.308979424336737 29.59732327664966 24.31299630662501 44 21.174226652807775 24.22620349208156 28.47553176512172 26.12403808998895 45 20.245416231080064 22.516182853514096 29.15092813644819 28.087472778957647 46 22.561938168169878 23.958561111427297 28.12925913833232 25.350241582070502 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 4296.0 1 3796.5 2 3297.0 3 5888.0 4 8479.0 5 5869.0 6 3259.0 7 3259.0 8 3048.0 9 2837.0 10 2884.5 11 2932.0 12 2812.0 13 2692.0 14 2678.5 15 2665.0 16 2852.0 17 3039.0 18 3126.5 19 3214.0 20 3214.0 21 3672.0 22 4130.0 23 5469.5 24 6809.0 25 8426.0 26 10043.0 27 11510.0 28 12977.0 29 16605.0 30 20233.0 31 20233.0 32 23807.0 33 27381.0 34 31122.5 35 34864.0 36 38966.5 37 43069.0 38 48506.5 39 53944.0 40 62080.5 41 70217.0 42 85156.5 43 100096.0 44 100096.0 45 108007.0 46 115918.0 47 139646.5 48 163375.0 49 153495.5 50 143616.0 51 129445.0 52 115274.0 53 101356.5 54 87439.0 55 77992.5 56 68546.0 57 68546.0 58 63507.5 59 58469.0 60 53729.0 61 48989.0 62 43613.0 63 38237.0 64 32218.5 65 26200.0 66 22101.0 67 18002.0 68 15130.5 69 12259.0 70 12259.0 71 9602.5 72 6946.0 73 5767.0 74 4588.0 75 3962.5 76 3337.0 77 2612.0 78 1887.0 79 1414.0 80 941.0 81 941.0 82 708.0 83 475.0 84 377.0 85 279.0 86 178.0 87 77.0 88 49.0 89 21.0 90 14.5 91 8.0 92 5.0 93 2.0 94 2.0 95 2.5 96 3.0 97 2.5 98 2.0 99 1.5 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 46 1335364.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 32.27645654198867 #Duplication Level Percentage of deduplicated Percentage of total 1 74.83113582286978 24.15283903374508 2 9.900283444180891 6.390921366789488 3 3.802768828556127 3.6821970850236307 4 2.017329520750806 2.6044899442953695 5 1.2738792553437939 2.055815421242243 6 0.8952994678121109 1.7338256618941907 7 0.6683566435181093 1.510052891134317 8 0.5320705147952967 1.373868067845115 9 0.45617263051667073 1.325127247606438 >10 5.086597157589915 37.13203166834392 >50 0.47737022463791395 9.614722082483276 >100 0.05034556241791531 2.8591072032020217 >500 0.004555074662923125 1.0184732698352204 >1k 0.0031166300325263492 2.350799113933596 >5k 4.794815434655921E-4 1.2754516719870792 >10k+ 2.3974077173279605E-4 0.9202782706389816 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GAATCTGTCTCTTATACACATCTGACGCTTCCCCTATCGTATGCCG 11893 0.8906185878906425 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCTTCCCCTATCGTA 8650 0.647763456256122 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCTTCCCCTATCG 7833 0.5865816361681159 No Hit GCTGTCTCTTATACACATCTGACGCTTCCCCTATCGTATGCCGTCT 4512 0.3378854005349852 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3983 0.2982707336726166 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 3657 0.27385791439637436 No Hit CCTGTCTCTTATACACATCTGACGCTTCCCCTATCGTATGCCGTCT 3329 0.24929532322273176 No Hit GAACTGTCTCTTATACACATCTGACGCTTCCCCTATCGTATGCCGT 2945 0.22053911892188197 No Hit GAATGACTGTCTCTTATACACATCTGACGCTTCCCCTATCGTATGC 2332 0.17463403236870248 No Hit CTGTCTCTTATACACATCTGACGCTTCCCCTATCGTATGCCGTCTT 2097 0.157035834424172 No Hit GAATGATCTGTCTCTTATACACATCTGACGCTTCCCCTATCGTATG 1834 0.13734082991603788 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.18496829328932035 0.0 2 0.0 0.0 0.0 1.0025730811973363 0.0 3 0.0 0.0 0.0 1.3319214835805069 0.0 4 0.0 0.0 0.0 1.9684520475316094 0.0 5 0.0 0.0 0.0 3.9300145877828068 0.0 6 7.48859487001297E-5 0.0 0.0 5.360036664160484 0.0 7 7.48859487001297E-5 0.0 0.0 6.471194370973008 0.0 8 7.48859487001297E-5 0.0 0.0 8.33143622263293 0.0 9 7.48859487001297E-5 0.0 0.0 9.010202461650906 0.0 10 7.48859487001297E-5 0.0 0.0 10.903169472892785 0.0 11 7.48859487001297E-5 0.0 0.0 12.135267986856018 0.0 12 7.48859487001297E-5 0.0 0.0 13.846786344397483 0.0 13 7.48859487001297E-5 0.0 0.0 14.390757875755225 0.0 14 7.48859487001297E-5 0.0 0.0 14.64192534769546 0.0 15 7.48859487001297E-5 0.0 0.0 15.057542362981179 0.0 16 7.48859487001297E-5 0.0 0.0 15.812093182083686 0.0 17 7.48859487001297E-5 0.0 0.0 16.661898927932757 0.0 18 7.48859487001297E-5 0.0 0.0 17.70678257014567 0.0 19 7.48859487001297E-5 0.0 0.0 18.231882842430977 0.0 20 7.48859487001297E-5 0.0 0.0 18.722011376673326 0.0 21 7.48859487001297E-5 0.0 0.0 19.311139135097246 0.0 22 7.48859487001297E-5 0.0 0.0 19.916067828696896 0.0 23 7.48859487001297E-5 0.0 0.0 20.506468648248717 0.0 24 1.497718974002594E-4 0.0 0.0 20.961924988242906 0.0 25 1.497718974002594E-4 0.0 0.0 21.363463445173 0.0 26 1.497718974002594E-4 0.0 0.0 21.73834250436585 0.0 27 1.497718974002594E-4 0.0 0.0 22.14033027698815 0.0 28 1.497718974002594E-4 0.0 0.0 22.55182856509536 0.0 29 2.2465784610038912E-4 0.0 0.0 22.980999937095802 0.0 30 2.2465784610038912E-4 0.0 0.0 23.5001842194338 0.0 31 2.2465784610038912E-4 0.0 0.0 23.936020440868557 0.0 32 2.2465784610038912E-4 0.0 0.0 24.355980841178884 0.0 33 2.2465784610038912E-4 0.0 0.0 24.776764986924913 0.0 34 2.2465784610038912E-4 0.0 0.0 25.1734358571895 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CCGTATG 30 4.8681068E-6 40.000004 1 CGTAATC 20 0.0012558417 40.0 22 TATAGCG 40 1.9286745E-8 40.0 1 ACCGTAA 20 0.0012558417 40.0 20 CGCCGTT 20 0.0012558417 40.0 26 CGATCTA 20 0.0012558417 40.0 10 TAGTCCG 20 0.0012558417 40.0 1 CCGTAAG 65 0.0 36.923077 1 CGAATAT 65 0.0 36.923077 14 CGTACGG 65 0.0 36.923077 2 GTTCACG 65 0.0 36.923077 1 GCTCGAG 60 1.4551915E-11 36.666668 1 CGTAAGG 255 0.0 36.07843 2 CGTTTTT 2215 0.0 36.02709 1 GTCAACG 45 5.4436896E-8 35.555553 1 CGGTCTA 75 0.0 34.666668 31 AAGGGAT 1415 0.0 34.628975 5 CGACGGT 70 1.8189894E-12 34.285713 28 GCGAATT 35 1.401237E-5 34.285713 9 TCGACAG 35 1.401237E-5 34.285713 1 >>END_MODULE