##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3553785_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 835175 Sequences flagged as poor quality 0 Sequence length 46 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.551625707187117 31.0 31.0 34.0 30.0 34.0 2 31.71913910258329 31.0 31.0 34.0 30.0 34.0 3 31.664275151914268 31.0 31.0 34.0 30.0 34.0 4 35.47663184362559 37.0 35.0 37.0 33.0 37.0 5 33.603517825605415 37.0 35.0 37.0 30.0 37.0 6 34.4072272278265 37.0 35.0 37.0 30.0 37.0 7 35.31165803574101 37.0 35.0 37.0 32.0 37.0 8 35.39715269254947 37.0 35.0 37.0 33.0 37.0 9 37.13872421947496 39.0 37.0 39.0 34.0 39.0 10 36.55614212590176 38.0 35.0 39.0 32.0 39.0 11 36.30868979555183 38.0 35.0 39.0 32.0 39.0 12 36.57139282186368 39.0 35.0 39.0 32.0 39.0 13 33.12917173047565 38.0 35.0 39.0 15.0 39.0 14 35.31936061304517 39.0 35.0 40.0 18.0 41.0 15 36.642143263387915 39.0 35.0 40.0 30.0 41.0 16 37.24166072978717 39.0 36.0 40.0 32.0 41.0 17 37.380495105816145 39.0 36.0 40.0 32.0 41.0 18 37.520350824677465 39.0 36.0 40.0 32.0 41.0 19 37.50447151794534 39.0 36.0 40.0 32.0 41.0 20 37.51376897057503 39.0 36.0 40.0 32.0 41.0 21 37.409042416260064 39.0 36.0 40.0 32.0 41.0 22 37.42883826742898 39.0 36.0 40.0 32.0 41.0 23 37.30830305025893 39.0 36.0 40.0 32.0 41.0 24 37.322551561050076 39.0 36.0 40.0 32.0 41.0 25 37.11057323315473 39.0 35.0 40.0 31.0 41.0 26 37.08056754572395 39.0 35.0 40.0 31.0 41.0 27 36.65796270242763 39.0 35.0 40.0 31.0 41.0 28 36.69987008710749 39.0 35.0 40.0 30.0 41.0 29 36.75867452929027 39.0 35.0 40.0 30.0 41.0 30 36.241956476187625 39.0 35.0 40.0 30.0 41.0 31 36.30777741191966 39.0 35.0 40.0 30.0 41.0 32 36.290003891400005 38.0 35.0 40.0 30.0 41.0 33 36.22803843505852 38.0 35.0 40.0 30.0 41.0 34 36.27827700781273 38.0 35.0 40.0 30.0 41.0 35 36.21316490555871 38.0 35.0 40.0 30.0 41.0 36 36.07550034423923 38.0 35.0 40.0 30.0 41.0 37 36.04656149908702 38.0 35.0 40.0 30.0 41.0 38 35.9470051186877 38.0 35.0 40.0 29.0 41.0 39 35.90540904600832 38.0 35.0 40.0 29.0 41.0 40 35.78455054329931 38.0 35.0 40.0 28.0 41.0 41 35.601931331756816 38.0 34.0 40.0 28.0 41.0 42 35.51956655790703 38.0 34.0 40.0 27.0 41.0 43 35.37129942826354 38.0 34.0 40.0 27.0 41.0 44 35.263190349327985 38.0 34.0 40.0 27.0 41.0 45 35.21528302451582 38.0 34.0 40.0 26.0 41.0 46 33.87084263777053 36.0 32.0 40.0 23.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 4.0 9 14.0 10 15.0 11 13.0 12 18.0 13 7.0 14 18.0 15 33.0 16 48.0 17 97.0 18 210.0 19 417.0 20 720.0 21 1210.0 22 1955.0 23 2861.0 24 4037.0 25 5663.0 26 7452.0 27 9716.0 28 12511.0 29 16194.0 30 20600.0 31 26472.0 32 34365.0 33 45612.0 34 62561.0 35 79173.0 36 95847.0 37 126213.0 38 154334.0 39 126785.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 32.70907294878319 25.609363307091325 22.116562397102406 19.565001347023077 2 25.09198670937229 27.22962253419942 24.464453557637622 23.213937198790674 3 26.735833807285896 28.820786062801208 23.616128356332506 20.82725177358039 4 25.233513934205405 27.691561648756245 23.069895530876764 24.005028886161583 5 20.405424012931423 35.81177597509504 19.45628161762505 24.32651839434849 6 18.831741850510372 39.89966174753794 22.75307570269704 18.515520699254647 7 79.67324213488192 7.666776424102734 8.030532523123895 4.62944891789146 8 78.13787529559673 6.176669560271799 9.311341934325142 6.374113209806328 9 71.72305205495854 9.114975903253809 11.572065734726255 7.589906307061395 10 32.42781452988894 26.83497470589996 20.077947735504534 20.659263028706558 11 26.03897386775227 28.071362289340556 24.766426198102195 21.12323764480498 12 21.703595054928606 23.902415661388332 31.708564073397795 22.68542521028527 13 20.968898733798305 30.348609572844016 30.037417307749877 18.645074385607806 14 20.43811177298171 27.48226419612656 29.627922291735263 22.451701739156466 15 18.85544945670069 27.61457179633011 31.224234441883436 22.30574430508576 16 20.81455982279163 25.47657676534858 30.204328434160505 23.504534977699283 17 19.698985242613823 27.398209955997245 27.935103421438622 24.96770137995031 18 22.136917412518333 24.927230819888045 28.78486544736133 24.15098632023229 19 22.589277696291195 29.417666956027176 25.338641602059447 22.654413745622175 20 24.006585446163978 25.751130002694044 27.182446792588376 23.0598377585536 21 24.486963809979944 28.841260813601938 26.418894243721375 20.25288113269674 22 21.94749603376538 25.165504235639236 25.907743886011914 26.97925584458347 23 20.798395545843682 28.811087496632442 25.707306851857396 24.68321010566648 24 21.834106624360164 25.730535516508517 28.348908911306015 24.086448947825307 25 23.307809740473555 27.604154817852546 24.270841440416678 24.817194001257224 26 20.83527404436196 26.340347831292842 27.84721764899572 24.97716047534948 27 23.075882300116742 26.60903403478313 26.306821923548956 24.00826174155117 28 20.924596641422458 26.228275511120426 29.16382794025204 23.683299907205075 29 23.853683359774898 25.73939593498369 25.597389768611368 24.809530936630047 30 24.84712784745712 24.403149040620228 27.911994492172298 22.83772861975035 31 23.92971532912264 25.975394378423683 26.206603406471697 23.88828688598198 32 23.160415481785254 25.38797258059688 28.7942048073757 22.657407130242166 33 22.584488280899212 24.20319094800491 27.70257730415781 25.50974346693807 34 22.32047175741611 23.340018558984642 29.738557787290087 24.600951896309155 35 22.786721345825725 22.804082976621668 28.857664561319485 25.55153111623312 36 23.922052264495466 24.432963151435327 28.31466459125333 23.330319992815877 37 21.647199688687998 24.3232855389589 29.332774568204268 24.69674020414883 38 21.743107731912474 24.28257550812704 30.288861615829017 23.68545514413147 39 23.656119974855567 22.04065016313946 26.980572933816266 27.322656928188703 40 24.336935372826055 21.495494956146917 30.360343640554376 23.807226030472656 41 20.183793815667375 24.19169635106415 28.554973508546112 27.069536324722364 42 22.083754901667316 23.54141347621756 29.580986020893825 24.7938456012213 43 21.653904870236776 22.635615290208637 30.47349357918999 25.236986260364596 44 22.965246804561918 23.069536324722364 29.421737959110366 24.54347891160535 45 23.483581285359357 21.866554913640854 28.415601520639388 26.234262280360404 46 25.05115694315563 22.353398988236 28.370940222109137 24.22450384649924 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 4953.0 1 4204.0 2 3455.0 3 3866.0 4 4277.0 5 3277.0 6 2277.0 7 2277.0 8 4062.0 9 5847.0 10 4503.0 11 3159.0 12 2679.0 13 2199.0 14 2425.0 15 2651.0 16 2769.0 17 2887.0 18 2810.5 19 2734.0 20 2734.0 21 2605.0 22 2476.0 23 2930.0 24 3384.0 25 4346.5 26 5309.0 27 6218.0 28 7127.0 29 8832.5 30 10538.0 31 10538.0 32 12027.0 33 13516.0 34 14902.0 35 16288.0 36 18773.0 37 21258.0 38 24738.0 39 28218.0 40 32184.0 41 36150.0 42 43101.0 43 50052.0 44 50052.0 45 58212.0 46 66372.0 47 75108.5 48 83845.0 49 86242.5 50 88640.0 51 81376.0 52 74112.0 53 65300.0 54 56488.0 55 52563.5 56 48639.0 57 48639.0 58 45771.0 59 42903.0 60 39900.5 61 36898.0 62 33759.5 63 30621.0 64 27134.0 65 23647.0 66 20867.5 67 18088.0 68 15566.5 69 13045.0 70 13045.0 71 10624.0 72 8203.0 73 7286.0 74 6369.0 75 5284.0 76 4199.0 77 3132.5 78 2066.0 79 1775.0 80 1484.0 81 1484.0 82 1005.5 83 527.0 84 347.0 85 167.0 86 111.5 87 56.0 88 43.0 89 30.0 90 23.0 91 16.0 92 10.5 93 5.0 94 5.0 95 2.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 46 835175.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 34.76902499627722 #Duplication Level Percentage of deduplicated Percentage of total 1 76.5893514866003 26.62937076286267 2 9.47923496461941 6.591675148608743 3 3.678022587207476 3.8364377781446675 4 1.9371272186793576 2.6940809874892615 5 1.156783863700565 2.011012353614754 6 0.8160566556518941 1.7024096555243458 7 0.6081282764813337 1.480081907214573 8 0.4335437137365869 1.2059113775908994 9 0.40273218003216477 1.2602344710909197 >10 4.401555148520905 36.06584630292222 >50 0.43378305336567 9.391564646706351 >100 0.05409448667676445 3.397366483923727 >500 0.0054779227014443745 1.2872852542799826 >1k 0.004108442026083281 2.4467228700268873 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 4337 0.5192923638758344 No Hit CCTGTCTCTTATACACATCTGACGCGTTTGCTCTCGTATGCCGTCT 2855 0.34184452360283774 No Hit GCTGTCTCTTATACACATCTGACGCGTTTGCTCTCGTATGCCGTCT 1780 0.21312898494327534 No Hit CTGTCTCTTATACACATCTGACGCGTTTGCTCTCGTATGCCGTCTT 1707 0.2043883018529051 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1595 0.19097793875535068 No Hit GAATCTGTCTCTTATACACATCTGACGCGTTTGCTCTCGTATGCCG 1523 0.18235699104977998 No Hit ATATATATATACATATATATGTATATATACATATATATGTATATAT 1380 0.16523483102343822 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCGTTTGCTCTCG 1139 0.13637860328673632 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCGTTTGCTCTCGTA 1138 0.13625886790193673 No Hit ATATATATATATGTATATATACATATATATGTATATATACATATAT 1085 0.1299128925075583 No Hit AAAACTGTCTCTTATACACATCTGACGCGTTTGCTCTCGTATGCCG 1011 0.12105247403238842 No Hit ATTCCTCCAGATCTCTACGCATTTCACCGCTACACCTGGAATTCTA 1004 0.12021432633879127 No Hit ACTGTCTCTTATACACATCTGACGCGTTTGCTCTCGTATGCCGTCT 927 0.11099470170922261 No Hit CGCTGTCTCTTATACACATCTGACGCGTTTGCTCTCGTATGCCGTC 906 0.10848025862843116 No Hit GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 905 0.10836052324363157 No Hit ATATATATATGTATATATACATATATATGTATATATACATATATAT 881 0.10548687400844135 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 1.197353847995929E-4 0.0 0.0 0.24737330499595894 0.0 2 1.197353847995929E-4 0.0 0.0 1.116173257101805 0.0 3 1.197353847995929E-4 0.0 0.0 1.5091447900140689 0.0 4 1.197353847995929E-4 0.0 0.0 1.9949112461460172 0.0 5 1.197353847995929E-4 0.0 0.0 3.422875445265962 0.0 6 1.197353847995929E-4 0.0 0.0 4.863651330559463 0.0 7 1.197353847995929E-4 0.0 0.0 5.919118747567875 0.0 8 1.197353847995929E-4 0.0 0.0 7.909120842937109 0.0 9 1.197353847995929E-4 0.0 0.0 8.666686622564134 0.0 10 1.197353847995929E-4 0.0 0.0 10.156554015625467 0.0 11 1.197353847995929E-4 0.0 0.0 11.59709043014937 0.0 12 1.197353847995929E-4 0.0 0.0 13.018109976950939 0.0 13 1.197353847995929E-4 0.0 0.0 13.59104379321699 0.0 14 1.197353847995929E-4 0.0 0.0 13.865477295177657 0.0 15 1.197353847995929E-4 0.0 0.0 14.235818840362798 0.0 16 1.197353847995929E-4 0.0 0.0 15.058041727781603 0.0 17 1.197353847995929E-4 0.0 0.0 15.971862184572096 0.0 18 1.197353847995929E-4 0.0 0.0 17.168138414104828 0.0 19 1.197353847995929E-4 0.0 0.0 17.68288083335828 0.0 20 1.197353847995929E-4 0.0 0.0 18.225521597270035 0.0 21 2.394707695991858E-4 0.0 0.0 18.830424761277577 0.0 22 5.986769239979645E-4 0.0 0.0 19.424312269883558 0.0 23 5.986769239979645E-4 0.0 0.0 20.032807495435087 0.0 24 5.986769239979645E-4 0.0 0.0 20.549106474690934 0.0 25 5.986769239979645E-4 0.0 0.0 20.975005238423083 0.0 26 5.986769239979645E-4 0.0 0.0 21.348938845152215 0.0 27 5.986769239979645E-4 0.0 0.0 21.759750950399617 0.0 28 5.986769239979645E-4 0.0 0.0 22.17056305564702 0.0 29 5.986769239979645E-4 0.0 0.0 22.599574939383963 0.0 30 5.986769239979645E-4 0.0 0.0 23.137785494058132 0.0 31 5.986769239979645E-4 0.0 0.0 23.57290388241985 0.0 32 5.986769239979645E-4 0.0 0.0 24.019636603107134 0.0 33 5.986769239979645E-4 0.0 0.0 24.432723680665728 0.0 34 5.986769239979645E-4 0.0 0.0 24.83503457359236 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGAACAT 25 7.792823E-5 40.0 37 CAATTGA 20 0.0012555717 40.0 31 GCGTTAC 20 0.0012555717 40.0 36 TAACCGT 20 0.0012555717 40.0 22 TGCGAAC 25 7.792823E-5 40.0 35 TGTTACG 20 0.0012555717 40.0 1 TCATCGC 20 0.0012555717 40.0 35 GTATACG 35 3.0550473E-7 40.0 1 TATAGCG 20 0.0012555717 40.0 1 TACTACG 25 7.792823E-5 40.0 1 CGCAAGT 20 0.0012555717 40.0 29 AGTAACG 45 1.2205419E-9 40.0 1 ACGGGAC 305 0.0 38.032787 5 CGTACAC 60 1.4551915E-11 36.666668 25 CTACGCA 165 0.0 36.363636 15 CCGTCTT 270 0.0 36.296295 40 TTCACGG 105 0.0 36.19048 2 ACGGGCC 150 0.0 36.0 5 AGTACGG 145 0.0 35.86207 2 CGCATCG 45 5.439506E-8 35.555553 21 >>END_MODULE