SRR3553778_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553778_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	519797
Sequences flagged as poor quality	0
Sequence length	46
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	4375	0.8416747307121818	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1442	0.27741599124273514	No Hit
CCTGTCTCTTATACACATCTGACGCGGTCTGAATCGTATGCCGTCT	1319	0.25375290738499834	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	882	0.16968162571157586	No Hit
CTGTCTCTTATACACATCTGACGCGGTCTGAATCGTATGCCGTCTT	869	0.16718064936888824	No Hit
GCTGTCTCTTATACACATCTGACGCGGTCTGAATCGTATGCCGTCT	864	0.16621873539093146	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	639	0.12293260638287638	No Hit
ATTCCTCCAGATCTCTACGCATTTCACCGCTACACCTGGAATTCTA	591	0.11369823219449131	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTCGACT	20	0.001255134	40.000004	35
ATCTACC	20	0.001255134	40.000004	15
CTATAAC	40	1.9248546E-8	40.000004	37
CGGCACG	20	0.001255134	40.000004	32
TAGCGCA	20	0.001255134	40.000004	21
ATTCGCC	20	0.001255134	40.000004	11
GCGCTAT	20	0.001255134	40.000004	34
GCGTAAG	20	0.001255134	40.000004	1
CCCGCGA	20	0.001255134	40.000004	36
TGTCACG	25	7.7887555E-5	40.0	1
ACTTCGG	55	5.456968E-12	40.0	12
ACGATAG	35	3.052064E-7	40.0	1
GTTCGAT	50	7.8216544E-11	40.0	39
CGTAGTG	25	7.7887555E-5	40.0	28
CGGGCTA	65	0.0	40.0	6
CGAATAT	70	0.0	40.0	14
GCTACGA	70	0.0	40.0	10
GGTTCGA	50	7.8216544E-11	40.0	38
TTCGATT	50	7.8216544E-11	40.0	40
CGTCATC	25	7.7887555E-5	40.0	38