SRR3553773_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553773_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	949481
Sequences flagged as poor quality	0
Sequence length	46
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	23377	2.4620819163311323	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2954	0.31111733673448966	No Hit
CGCTGTCTCTTATACACATCTGACGCGGAAATGGTCGTATGCCGTC	2517	0.265092192471466	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCGGAAATGGTCGTATGCC	1681	0.17704409040307284	No Hit
CGTTTTCTGTCTCTTATACACATCTGACGCGGAAATGGTCGTATGC	1532	0.16135130666121808	No Hit
CCTGTCTCTTATACACATCTGACGCGGAAATGGTCGTATGCCGTCT	1177	0.1239624594910272	No Hit
CGTTCTGTCTCTTATACACATCTGACGCGGAAATGGTCGTATGCCG	1135	0.11953899024835674	No Hit
CGTTTTTTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1097	0.11553680379070248	No Hit
CGTCTGTCTCTTATACACATCTGACGCGGAAATGGTCGTATGCCGT	1062	0.11185057942181044	No Hit
GAATCTGTCTCTTATACACATCTGACGCGGAAATGGTCGTATGCCG	1047	0.11027076897799956	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTATGCG	40	1.927765E-8	40.0	1
ATCGCCA	50	7.8216544E-11	40.0	24
CGTTTTT	11750	0.0	38.995743	1
CGTATGG	75	0.0	37.333332	2
CGTACGG	65	0.0	36.923077	2
CATCGCC	55	2.1645974E-10	36.363636	23
GTTTTTT	12965	0.0	35.233322	2
CGGGTAT	160	0.0	35.0	6
GCCGATC	40	8.697807E-7	35.0	9
AAGCACG	40	8.697807E-7	35.0	1
TCGTAAG	40	8.697807E-7	35.0	1
AATGCGG	150	0.0	34.666668	2
GCGTACG	35	1.4008116E-5	34.285713	1
AAATGCG	35	1.4008116E-5	34.285713	1
CGCATGG	200	0.0	34.0	2
CTAAACG	65	3.45608E-11	33.846153	1
AGTAGCG	65	3.45608E-11	33.846153	1
CGCACTT	355	0.0	33.802814	35
TCGTTTA	60	5.511538E-10	33.333336	38
CATCGTT	60	5.511538E-10	33.333336	36