##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3553773_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 949481 Sequences flagged as poor quality 0 Sequence length 46 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.69283640220289 31.0 31.0 34.0 30.0 34.0 2 31.879212959501032 33.0 31.0 34.0 30.0 34.0 3 31.538359377386172 31.0 31.0 34.0 28.0 34.0 4 35.50294739968467 37.0 35.0 37.0 33.0 37.0 5 35.380120297299264 37.0 35.0 37.0 33.0 37.0 6 35.40037452039588 37.0 35.0 37.0 33.0 37.0 7 35.77946794090666 37.0 35.0 37.0 35.0 37.0 8 35.60589522065212 37.0 35.0 37.0 35.0 37.0 9 37.364904616311435 39.0 37.0 39.0 34.0 39.0 10 36.896700407907055 39.0 37.0 39.0 32.0 39.0 11 36.860640707923594 39.0 37.0 39.0 32.0 39.0 12 36.908427867434945 39.0 37.0 39.0 33.0 39.0 13 35.3725730162057 39.0 35.0 39.0 30.0 39.0 14 37.151608089050754 40.0 37.0 41.0 31.0 41.0 15 37.72889083615154 40.0 37.0 41.0 32.0 41.0 16 37.885679650251035 40.0 37.0 41.0 33.0 41.0 17 37.90363998858324 40.0 37.0 41.0 33.0 41.0 18 37.7868614537837 39.0 37.0 41.0 33.0 41.0 19 37.59515250963421 39.0 37.0 41.0 33.0 41.0 20 37.378940705501215 39.0 35.0 41.0 33.0 41.0 21 37.24081366557098 39.0 35.0 41.0 32.0 41.0 22 37.234580786766664 39.0 35.0 41.0 33.0 41.0 23 37.150232600757676 39.0 35.0 40.0 32.0 41.0 24 37.06300284049918 39.0 35.0 40.0 32.0 41.0 25 36.85201810252127 39.0 35.0 40.0 32.0 41.0 26 36.832969801396764 39.0 35.0 40.0 32.0 41.0 27 36.80225933957604 39.0 35.0 40.0 32.0 41.0 28 36.62375655752985 38.0 35.0 40.0 31.0 41.0 29 36.49359913468516 38.0 35.0 40.0 31.0 41.0 30 36.256391649753915 38.0 35.0 40.0 30.0 41.0 31 36.019373742075935 38.0 35.0 40.0 30.0 41.0 32 35.58933880720099 38.0 35.0 40.0 27.0 41.0 33 35.12567181439123 38.0 34.0 40.0 24.0 41.0 34 34.688643585285014 38.0 34.0 40.0 21.0 41.0 35 34.41060537283 38.0 34.0 40.0 20.0 41.0 36 34.17397925814208 38.0 33.0 40.0 18.0 41.0 37 34.07410048226347 38.0 33.0 40.0 18.0 41.0 38 33.89959883346797 38.0 33.0 40.0 18.0 41.0 39 33.77184904173964 38.0 33.0 40.0 16.0 41.0 40 33.63996435947639 38.0 33.0 40.0 16.0 41.0 41 33.54745592592163 37.0 33.0 40.0 15.0 41.0 42 33.42841826218745 37.0 33.0 40.0 15.0 41.0 43 33.330400503011646 37.0 32.0 40.0 15.0 41.0 44 33.19782597018792 37.0 32.0 40.0 15.0 41.0 45 33.144246172382594 37.0 32.0 40.0 15.0 41.0 46 32.312497037855415 36.0 31.0 40.0 12.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 1.0 8 3.0 9 19.0 10 22.0 11 21.0 12 20.0 13 21.0 14 12.0 15 32.0 16 72.0 17 162.0 18 337.0 19 655.0 20 1186.0 21 1974.0 22 3077.0 23 4570.0 24 6768.0 25 10030.0 26 15296.0 27 22814.0 28 28067.0 29 28419.0 30 27880.0 31 29421.0 32 34032.0 33 42508.0 34 59088.0 35 76485.0 36 90700.0 37 122108.0 38 175219.0 39 168462.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 27.892606592443663 19.226398421874688 18.40573955666306 34.47525542901859 2 34.66209434417329 23.678093611141243 19.924674638039097 21.73513740664637 3 24.03639461979755 23.854505777366793 31.464031402418797 20.645068200416862 4 21.56757217890616 24.868533440900872 31.26286887257354 22.301025507619425 5 19.455576256923518 28.677035138143893 29.481263974739885 22.386124630192704 6 18.335490652261605 34.93297917493873 30.097811330611147 16.63371884218852 7 73.86551179012534 4.9699783355327805 17.228570134631447 3.935939739710431 8 73.00146079805704 4.950915289510796 17.341473921015798 4.706149991416363 9 65.91759076800905 7.296933798569956 20.573555447660354 6.211919985760642 10 29.854520522264266 25.734269564109237 27.04719736361233 17.364012550014166 11 24.355726970839857 24.761738254899253 33.31809693927524 17.56443783498564 12 20.506676805539026 21.754727056149623 37.38758332183583 20.351012816475528 13 19.83315095299432 23.93644527905245 37.96389817173804 18.266505596215197 14 19.163521966211015 24.11106699344168 36.664662062747965 20.060748977599342 15 18.448710400734715 23.09977766801021 39.55350344030054 18.89800849095453 16 19.800922819940578 23.337697120848127 37.54703885596447 19.314341203246826 17 19.29053872589341 23.74128602889368 35.52393360162026 21.444241643592658 18 20.67824421973689 23.01941797676836 36.014622725467916 20.28771507802684 19 21.92260824597859 24.987967110452974 33.86323686308626 19.226187780482178 20 23.087455146548482 23.000986854923898 33.66312754020354 20.248430458324073 21 23.030266008482528 24.920351223457867 33.7086260809853 18.340756687074308 22 22.02403207647125 23.087876429333498 33.131468665513054 21.756622828682197 23 20.5968313215325 24.9198246199766 33.551803564263004 20.9315404942279 24 20.036735858853415 23.488621678580195 35.40523717694193 21.069405285624462 25 20.82232293221244 24.77069051408085 33.59561697390469 20.81136957980202 26 19.87527923149594 24.622398973755136 34.56161839994692 20.940703394802 27 21.841616630559223 23.26586840600286 33.469337459096074 21.423177504341844 28 21.07140637885329 25.149845020595464 34.03248722196653 19.74626137858472 29 21.60338121563254 24.408597960359398 32.564527357577454 21.423493466430607 30 22.818676729708127 23.841024728246275 32.45520447486574 20.88509406717986 31 23.15338590240352 24.485482068624858 31.293938477968492 21.06719355100313 32 23.93075796145473 25.46033043315243 30.852223477878965 19.756688127513875 33 23.499996313775632 26.290362840330666 29.322440364788765 20.88720048110494 34 22.813831977680437 27.49375711572954 29.91529056400286 19.77712034258716 35 23.292409221458882 26.89511427822147 29.760258499116887 20.052218001202764 36 23.82954477235458 28.787095265729384 27.62172176167822 19.76163820023781 37 23.846817366540247 27.929152874043822 29.189420325419885 19.034609433996046 38 23.591625319516663 27.605607695151352 29.23955297683682 19.563214008495166 39 23.93918361715506 26.329647460033428 28.920220625794514 20.810948297017003 40 24.178366918348022 24.925722578966823 31.29383315727224 19.602077345412916 41 22.90862060430909 25.426522489654875 29.761838309560694 21.903018596475338 42 23.92559724733828 25.839168977578275 29.300323018575412 20.934910756508028 43 22.99814319612504 25.095078258543353 30.65485249309886 21.251926052232747 44 23.273767458221915 26.52259497557086 29.100845619870224 21.102791946337 45 22.129458093421565 25.116669001275433 30.505823707899367 22.248049197403635 46 22.922944218999643 25.644325689508268 29.22733577607135 22.20539431542074 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 3205.0 1 2842.0 2 2479.0 3 20928.5 4 39378.0 5 26879.5 6 14381.0 7 14381.0 8 13418.0 9 12455.0 10 12101.5 11 11748.0 12 11085.0 13 10422.0 14 9849.5 15 9277.0 16 8574.5 17 7872.0 18 7352.5 19 6833.0 20 6833.0 21 6483.5 22 6134.0 23 6146.0 24 6158.0 25 6737.0 26 7316.0 27 8011.0 28 8706.0 29 10266.5 30 11827.0 31 11827.0 32 13904.5 33 15982.0 34 17570.5 35 19159.0 36 21831.0 37 24503.0 38 27310.5 39 30118.0 40 34246.5 41 38375.0 42 43671.0 43 48967.0 44 48967.0 45 56616.0 46 64265.0 47 71588.0 48 78911.0 49 81381.5 50 83852.0 51 78392.5 52 72933.0 53 64939.5 54 56946.0 55 53433.5 56 49921.0 57 49921.0 58 47796.0 59 45671.0 60 43121.0 61 40571.0 62 37569.0 63 34567.0 64 30236.0 65 25905.0 66 22595.0 67 19285.0 68 16844.5 69 14404.0 70 14404.0 71 12248.5 72 10093.0 73 8327.0 74 6561.0 75 5534.0 76 4507.0 77 3621.5 78 2736.0 79 2189.5 80 1643.0 81 1643.0 82 1250.5 83 858.0 84 603.0 85 348.0 86 235.0 87 122.0 88 82.5 89 43.0 90 39.0 91 35.0 92 20.0 93 5.0 94 5.0 95 4.5 96 4.0 97 2.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 46 949481.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 43.14443586610503 #Duplication Level Percentage of deduplicated Percentage of total 1 75.48893356564606 32.5692745282368 2 9.160146248519505 7.904186846867847 3 3.811442493636511 4.933276086721436 4 2.225863538014623 3.8413450665029414 5 1.6106775052815092 3.474588616379806 6 1.198443765521812 3.1023708108413537 7 0.9607465583965586 2.9015607790625024 8 0.7780274864060228 2.6854045591449243 9 0.6624297911701532 2.5722143676844222 >10 4.017353708591474 27.65337888503307 >50 0.058426938690516406 1.7334566854390192 >100 0.022152782418535296 1.8804498375169423 >500 0.0029212460218397476 0.8015858540200933 >1k 0.0021909345163798107 1.4916302802402208 >5k 0.0 0.0 >10k+ 2.4343716848664564E-4 2.4552767963086635 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 23377 2.4620819163311323 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 2954 0.31111733673448966 No Hit CGCTGTCTCTTATACACATCTGACGCGGAAATGGTCGTATGCCGTC 2517 0.265092192471466 No Hit CGTTTCTGTCTCTTATACACATCTGACGCGGAAATGGTCGTATGCC 1681 0.17704409040307284 No Hit CGTTTTCTGTCTCTTATACACATCTGACGCGGAAATGGTCGTATGC 1532 0.16135130666121808 No Hit CCTGTCTCTTATACACATCTGACGCGGAAATGGTCGTATGCCGTCT 1177 0.1239624594910272 No Hit CGTTCTGTCTCTTATACACATCTGACGCGGAAATGGTCGTATGCCG 1135 0.11953899024835674 No Hit CGTTTTTTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1097 0.11553680379070248 No Hit CGTCTGTCTCTTATACACATCTGACGCGGAAATGGTCGTATGCCGT 1062 0.11185057942181044 No Hit GAATCTGTCTCTTATACACATCTGACGCGGAAATGGTCGTATGCCG 1047 0.11027076897799956 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 2.1064139250811758E-4 0.0 0.0 0.08162353959689557 0.0 2 2.1064139250811758E-4 0.0 0.0 0.3666213436603787 0.0 3 2.1064139250811758E-4 0.0 0.0 0.7888520149429004 0.0 4 2.1064139250811758E-4 0.0 0.0 1.0868042646456326 0.0 5 2.1064139250811758E-4 0.0 0.0 1.7233625528051641 0.0 6 2.1064139250811758E-4 0.0 0.0 2.8186977938473756 0.0 7 2.1064139250811758E-4 0.0 0.0 3.6731646025565547 0.0 8 2.1064139250811758E-4 0.0 0.0 5.402846397136962 0.0 9 2.1064139250811758E-4 0.0 0.0 6.271742141232947 0.0 10 2.1064139250811758E-4 0.0 0.0 7.535590496281653 0.0 11 2.1064139250811758E-4 0.0 0.0 8.419757741334477 0.0 12 2.1064139250811758E-4 0.0 0.0 9.244524113700011 0.0 13 2.1064139250811758E-4 0.0 0.0 9.788926792637241 0.0 14 2.1064139250811758E-4 0.0 0.0 10.052649816057404 0.0 15 2.1064139250811758E-4 0.0 0.0 10.2899373447178 0.0 16 2.1064139250811758E-4 0.0 0.0 10.685311238455535 0.0 17 2.1064139250811758E-4 0.0 0.0 11.092375729477473 0.0 18 2.1064139250811758E-4 0.0 0.0 11.674588538369909 0.0 19 2.1064139250811758E-4 0.0 0.0 11.919459157160595 0.0 20 2.1064139250811758E-4 0.0 0.0 12.195504702042484 0.0 21 2.1064139250811758E-4 0.0 0.0 12.473761981545708 0.0 22 2.1064139250811758E-4 0.0 0.0 12.7745578900473 0.0 23 2.1064139250811758E-4 0.0 0.0 13.101368010523643 0.0 24 2.1064139250811758E-4 0.0 0.0 13.367724051350159 0.0 25 2.1064139250811758E-4 0.0 0.0 13.606064786973093 0.0 26 2.1064139250811758E-4 0.0 0.0 13.83924480847958 0.0 27 2.1064139250811758E-4 0.0 0.0 14.122662802099253 0.0 28 2.1064139250811758E-4 0.0 0.0 14.373220738487658 0.0 29 3.159620887621764E-4 0.0 0.0 14.634521385893978 0.0 30 3.159620887621764E-4 0.0 0.0 14.987029756256312 0.0 31 3.159620887621764E-4 0.0 0.0 15.250752779676477 0.0 32 3.159620887621764E-4 0.0 0.0 15.521953572530677 0.0 33 3.159620887621764E-4 0.0 0.0 15.78904685823097 0.0 34 3.159620887621764E-4 0.0 0.0 16.030125931956512 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTATGCG 40 1.927765E-8 40.0 1 ATCGCCA 50 7.8216544E-11 40.0 24 CGTTTTT 11750 0.0 38.995743 1 CGTATGG 75 0.0 37.333332 2 CGTACGG 65 0.0 36.923077 2 CATCGCC 55 2.1645974E-10 36.363636 23 GTTTTTT 12965 0.0 35.233322 2 CGGGTAT 160 0.0 35.0 6 GCCGATC 40 8.697807E-7 35.0 9 AAGCACG 40 8.697807E-7 35.0 1 TCGTAAG 40 8.697807E-7 35.0 1 AATGCGG 150 0.0 34.666668 2 GCGTACG 35 1.4008116E-5 34.285713 1 AAATGCG 35 1.4008116E-5 34.285713 1 CGCATGG 200 0.0 34.0 2 CTAAACG 65 3.45608E-11 33.846153 1 AGTAGCG 65 3.45608E-11 33.846153 1 CGCACTT 355 0.0 33.802814 35 TCGTTTA 60 5.511538E-10 33.333336 38 CATCGTT 60 5.511538E-10 33.333336 36 >>END_MODULE