Basic Statistics
Measure | Value |
---|---|
Filename | SRR3553768_1.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 853251 |
Sequences flagged as poor quality | 0 |
Sequence length | 46 |
%GC | 47 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 13873 | 1.6258990613547477 | No Hit |
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 1676 | 0.19642520196284566 | No Hit |
GAATCTGTCTCTTATACACATCTGACGCTGCACAAGTCGTATGCCG | 1659 | 0.19443282222933228 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CTCGTAC | 20 | 0.0012555867 | 40.000004 | 29 |
CGTTAGT | 20 | 0.0012555867 | 40.000004 | 28 |
CTTACCG | 20 | 0.0012555867 | 40.000004 | 1 |
ACGCGAG | 25 | 7.7929624E-5 | 40.0 | 1 |
ATAACGC | 25 | 7.7929624E-5 | 40.0 | 11 |
GCGTACG | 25 | 7.7929624E-5 | 40.0 | 1 |
CGTTTTT | 6540 | 0.0 | 38.776756 | 1 |
AAGGGCG | 585 | 0.0 | 36.239315 | 5 |
TATAGCG | 45 | 5.4396878E-8 | 35.555557 | 1 |
TTACGAG | 45 | 5.4396878E-8 | 35.555557 | 1 |
GCGTAAG | 45 | 5.4396878E-8 | 35.555557 | 1 |
CGTTAGG | 80 | 0.0 | 35.000004 | 2 |
GCGAAGT | 35 | 1.4006457E-5 | 34.285713 | 9 |
TCCGTCA | 35 | 1.4006457E-5 | 34.285713 | 29 |
TATCGCG | 35 | 1.4006457E-5 | 34.285713 | 1 |
TACGTAG | 35 | 1.4006457E-5 | 34.285713 | 1 |
AGGGCGA | 1425 | 0.0 | 34.245613 | 6 |
TTAACGG | 95 | 0.0 | 33.68421 | 2 |
CACGACC | 315 | 0.0 | 33.65079 | 27 |
ACCGCTA | 90 | 0.0 | 33.333336 | 26 |