##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3553768_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 853251 Sequences flagged as poor quality 0 Sequence length 46 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.876511132128766 31.0 31.0 34.0 30.0 34.0 2 32.05105180070108 33.0 31.0 34.0 30.0 34.0 3 31.846229304155518 33.0 31.0 34.0 30.0 34.0 4 35.703769465257 37.0 35.0 37.0 33.0 37.0 5 35.54590618704226 37.0 35.0 37.0 33.0 37.0 6 35.55373155144266 37.0 35.0 37.0 33.0 37.0 7 35.831438814604375 37.0 35.0 37.0 35.0 37.0 8 35.608108282322554 37.0 35.0 37.0 35.0 37.0 9 37.39623393350843 39.0 37.0 39.0 35.0 39.0 10 36.99114797404281 39.0 37.0 39.0 33.0 39.0 11 36.96748553473714 39.0 37.0 39.0 33.0 39.0 12 36.95449756285079 39.0 37.0 39.0 33.0 39.0 13 35.24919748116322 39.0 35.0 39.0 30.0 39.0 14 37.06134654398296 40.0 36.0 41.0 31.0 41.0 15 37.71328600845472 40.0 37.0 41.0 32.0 41.0 16 37.9121887932156 40.0 37.0 41.0 33.0 41.0 17 37.9456619447267 40.0 37.0 41.0 33.0 41.0 18 37.902551535245784 39.0 37.0 41.0 33.0 41.0 19 37.805207377430555 39.0 37.0 41.0 33.0 41.0 20 37.659514023423355 39.0 35.0 41.0 33.0 41.0 21 37.53414294269799 39.0 35.0 41.0 33.0 41.0 22 37.53359562426531 39.0 35.0 41.0 33.0 41.0 23 37.455461523045386 39.0 35.0 41.0 33.0 41.0 24 37.37641561510036 39.0 35.0 41.0 33.0 41.0 25 37.173040523831794 39.0 35.0 41.0 32.0 41.0 26 37.16380174180868 39.0 35.0 41.0 32.0 41.0 27 37.130629791233766 39.0 35.0 41.0 32.0 41.0 28 36.985419296314916 39.0 35.0 41.0 32.0 41.0 29 36.89033824747935 39.0 35.0 41.0 31.0 41.0 30 36.720680081242214 39.0 35.0 41.0 31.0 41.0 31 36.58472712015573 39.0 35.0 41.0 31.0 41.0 32 36.267561362365825 39.0 35.0 40.0 30.0 41.0 33 35.9801781656277 39.0 35.0 40.0 29.0 41.0 34 35.665888466582516 39.0 35.0 40.0 26.0 41.0 35 35.459578717165286 39.0 35.0 40.0 25.0 41.0 36 35.3084238987121 38.0 35.0 40.0 25.0 41.0 37 35.20006774091094 38.0 35.0 40.0 24.0 41.0 38 35.07174911016805 38.0 34.0 40.0 24.0 41.0 39 34.935811384926595 38.0 34.0 40.0 23.0 41.0 40 34.83803007555807 38.0 34.0 40.0 23.0 41.0 41 34.72541256910335 38.0 34.0 40.0 23.0 41.0 42 34.65389668456292 38.0 34.0 40.0 23.0 41.0 43 34.57839955651971 38.0 34.0 40.0 22.0 41.0 44 34.49377967327317 38.0 34.0 40.0 22.0 41.0 45 34.41138773936392 38.0 34.0 40.0 22.0 41.0 46 33.548149372224586 37.0 33.0 40.0 20.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 1.0 8 6.0 9 20.0 10 38.0 11 40.0 12 12.0 13 17.0 14 23.0 15 39.0 16 65.0 17 114.0 18 240.0 19 465.0 20 889.0 21 1458.0 22 2257.0 23 3299.0 24 4848.0 25 6881.0 26 10081.0 27 14425.0 28 18110.0 29 19702.0 30 20601.0 31 22972.0 32 27963.0 33 36698.0 34 53610.0 35 66951.0 36 80981.0 37 113021.0 38 168883.0 39 178541.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 32.653814645397425 19.870237479944354 19.99306183057506 27.48288604408316 2 31.23992822745007 24.64011176078317 21.143954123698656 22.97600588806811 3 26.90005637262658 24.765045689955244 26.955843005164954 21.37905493225323 4 23.792295584769313 25.246967187849766 27.06214232388828 23.898594903492643 5 21.054883029729822 29.307905879981387 25.55906761316424 24.07814347712455 6 19.57196651395662 37.0355264746247 26.637999838265646 16.754507173153037 7 77.74828274446793 5.220152100612832 13.161308923165635 3.8702562317536104 8 76.68400037034824 5.708519532939311 13.047157284316105 4.560322812396352 9 69.38087385775113 7.479276320801265 16.059869839003998 7.079979982443618 10 32.76093435577573 26.085055862811764 22.76000848519369 18.394001296218814 11 27.883119972903636 26.105565654186165 28.307965651373397 17.703348721536805 12 22.758016105460175 24.331761697320015 33.14921400619512 19.761008191024683 13 21.525553442070386 26.58151001288015 33.748803107174794 18.14413343787467 14 20.758252847052038 25.845735897174453 33.388768369448144 20.00724288632536 15 19.730536500982712 24.67691218644924 35.70039765555505 19.892153657013 16 22.343835518505106 24.800908525158484 33.086278246377674 19.768977709958733 17 22.772548757634038 24.72472930005356 31.442916562652723 21.059805379659675 18 23.63560077866888 23.125317169273753 32.40078241924123 20.838299632816135 19 24.440404992200417 25.333577106853667 29.91276892731447 20.31324897363144 20 26.41918966400274 23.93785650412364 30.06676816083427 19.576185671039354 21 26.01333019240528 26.00125871519635 30.153378079838173 17.832033012560196 22 24.782508312325447 23.57875935685982 30.298587402768938 21.34014492804579 23 22.876269702584583 26.00032112473352 30.598264754450916 20.52514441823098 24 22.149871491507188 24.95150899325052 31.76087692835988 21.137742586882407 25 22.58737464122515 26.309960375083065 30.376407411183813 20.726257572507972 26 21.59106757566062 25.17629630671397 31.482529759707283 21.750106357918128 27 22.81532632250065 24.973073573895608 30.800198300382885 21.41140180322086 28 21.584152845997252 26.36844258020207 31.21121451952591 20.836190054274766 29 22.687814019555795 25.74459332599669 30.520796342459604 21.046796311987915 30 22.754968936455978 24.83313819731826 31.159529845262412 21.25236302096335 31 23.946880812328377 24.818371147528687 29.494720779700227 21.74002726044271 32 23.78374007179599 25.646029128591703 29.6069972376241 20.963233561988208 33 23.541138539538775 26.211396177678083 28.17892976392644 22.068535518856702 34 22.174366042348616 26.24936859142269 30.254403452208084 21.32186191402061 35 22.700119894380435 27.909724102286432 28.440751900671668 20.949404102661468 36 23.13270069416854 28.84801775796337 26.45716207774734 21.56211947012075 37 23.225170553565132 29.352793023389367 26.300350072839056 21.121686350206446 38 22.556316957143913 28.936971653124345 27.203132489736316 21.30357889999543 39 23.296779025163755 27.697945856494748 26.881187364562127 22.124087753779367 40 23.62306050622853 26.515644282866358 28.872160712381234 20.98913449852388 41 21.806010189264356 27.47690890488262 28.326483063014287 22.39059784283874 42 23.033081707492872 26.92595730916225 28.349336830545756 21.69162415279912 43 22.903694223622356 25.771080256571633 28.902046408383935 22.42317911142208 44 23.453122234840627 26.08904062227879 28.318513544080233 22.139323598800352 45 22.777939902795307 25.75818838770772 28.665773611750822 22.79809809774615 46 22.37512760020205 26.878843388405055 28.300933722902172 22.445095288490727 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1911.0 1 1960.5 2 2010.0 3 13083.0 4 24156.0 5 16438.5 6 8721.0 7 8721.0 8 7992.0 9 7263.0 10 6999.0 11 6735.0 12 6425.0 13 6115.0 14 5792.5 15 5470.0 16 5108.5 17 4747.0 18 4515.0 19 4283.0 20 4283.0 21 4281.5 22 4280.0 23 4843.5 24 5407.0 25 6207.5 26 7008.0 27 8217.5 28 9427.0 29 11376.5 30 13326.0 31 13326.0 32 14360.5 33 15395.0 34 18028.0 35 20661.0 36 23264.0 37 25867.0 38 28811.5 39 31756.0 40 34570.0 41 37384.0 42 42006.5 43 46629.0 44 46629.0 45 50893.0 46 55157.0 47 60570.5 48 65984.0 49 67590.0 50 69196.0 51 65724.0 52 62252.0 53 59424.5 54 56597.0 55 53786.0 56 50975.0 57 50975.0 58 48812.0 59 46649.0 60 43161.0 61 39673.0 62 36560.5 63 33448.0 64 29410.0 65 25372.0 66 22833.0 67 20294.0 68 17303.0 69 14312.0 70 14312.0 71 12015.0 72 9718.0 73 7842.0 74 5966.0 75 4922.5 76 3879.0 77 3238.5 78 2598.0 79 2034.0 80 1470.0 81 1470.0 82 1085.0 83 700.0 84 484.5 85 269.0 86 183.0 87 97.0 88 65.5 89 34.0 90 34.0 91 34.0 92 25.0 93 16.0 94 16.0 95 12.0 96 8.0 97 5.0 98 2.0 99 1.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 46 853251.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 35.547109673447494 #Duplication Level Percentage of deduplicated Percentage of total 1 72.92972300330352 25.924408620525764 2 8.846220183508278 6.289151181172671 3 3.7145366343886725 3.9612312338595794 4 2.2110947700962726 3.143921131639935 5 1.5829236396787454 2.813418011217652 6 1.2767863710761078 2.7231639097323255 7 1.0237011582103828 2.5472732140617786 8 0.8991280148569916 2.556912172367248 9 0.8034381387761007 2.570391327141412 >10 6.612206943240831 41.26641172036422 >50 0.06748263465333842 1.5522409280555352 >100 0.030137827553941517 2.237529650911151 >500 0.001637925410536706 0.41012643406195565 >1k 6.551701642146824E-4 0.38835083974918283 >5k 0.0 0.0 >10k+ 3.275850821073412E-4 1.6154696251395544 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 13873 1.6258990613547477 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1676 0.19642520196284566 No Hit GAATCTGTCTCTTATACACATCTGACGCTGCACAAGTCGTATGCCG 1659 0.19443282222933228 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 1.1719880785372651E-4 0.0 0.0 0.055083439691251464 0.0 2 1.1719880785372651E-4 0.0 0.0 0.22877207293047416 0.0 3 1.1719880785372651E-4 0.0 0.0 0.3695278411627997 0.0 4 1.1719880785372651E-4 0.0 0.0 0.5448572577119746 0.0 5 1.1719880785372651E-4 0.0 0.0 0.9984166441058961 0.0 6 1.1719880785372651E-4 0.0 0.0 1.6002325224347818 0.0 7 1.1719880785372651E-4 0.0 0.0 2.0409000399647934 0.0 8 1.1719880785372651E-4 0.0 0.0 3.010485777338673 0.0 9 1.1719880785372651E-4 0.0 0.0 3.505885138136375 0.0 10 1.1719880785372651E-4 0.0 0.0 4.325690799073191 0.0 11 1.1719880785372651E-4 0.0 0.0 4.835622812044756 0.0 12 1.1719880785372651E-4 0.0 0.0 5.35657151295457 0.0 13 1.1719880785372651E-4 0.0 0.0 5.624136391284628 0.0 14 1.1719880785372651E-4 0.0 0.0 5.763602972630562 0.0 15 1.1719880785372651E-4 0.0 0.0 5.904007144439327 0.0 16 1.1719880785372651E-4 0.0 0.0 6.133599609024777 0.0 17 1.1719880785372651E-4 0.0 0.0 6.360379302221737 0.0 18 1.1719880785372651E-4 0.0 0.0 6.686074789247244 0.0 19 1.1719880785372651E-4 0.0 0.0 6.846285559583288 0.0 20 1.1719880785372651E-4 0.0 0.0 7.0115358786570425 0.0 21 1.1719880785372651E-4 0.0 0.0 7.174676619189429 0.0 22 1.1719880785372651E-4 0.0 0.0 7.349654439315043 0.0 23 1.1719880785372651E-4 0.0 0.0 7.529085814139099 0.0 24 1.1719880785372651E-4 0.0 0.0 7.672888751375621 0.0 25 1.1719880785372651E-4 0.0 0.0 7.824661207546197 0.0 26 1.1719880785372651E-4 0.0 0.0 7.966354566241352 0.0 27 1.1719880785372651E-4 0.0 0.0 8.148247116030335 0.0 28 1.1719880785372651E-4 0.0 0.0 8.300605566240181 0.0 29 1.1719880785372651E-4 0.0 0.0 8.459527149689833 0.0 30 1.1719880785372651E-4 0.0 0.0 8.701777085523487 0.0 31 1.1719880785372651E-4 0.0 0.0 8.866558609365825 0.0 32 1.1719880785372651E-4 0.0 0.0 9.055248690010325 0.0 33 1.1719880785372651E-4 0.0 0.0 9.22870292563384 0.0 34 1.1719880785372651E-4 0.0 0.0 9.40227436006521 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTCGTAC 20 0.0012555867 40.000004 29 CGTTAGT 20 0.0012555867 40.000004 28 CTTACCG 20 0.0012555867 40.000004 1 ACGCGAG 25 7.7929624E-5 40.0 1 ATAACGC 25 7.7929624E-5 40.0 11 GCGTACG 25 7.7929624E-5 40.0 1 CGTTTTT 6540 0.0 38.776756 1 AAGGGCG 585 0.0 36.239315 5 TATAGCG 45 5.4396878E-8 35.555557 1 TTACGAG 45 5.4396878E-8 35.555557 1 GCGTAAG 45 5.4396878E-8 35.555557 1 CGTTAGG 80 0.0 35.000004 2 GCGAAGT 35 1.4006457E-5 34.285713 9 TCCGTCA 35 1.4006457E-5 34.285713 29 TATCGCG 35 1.4006457E-5 34.285713 1 TACGTAG 35 1.4006457E-5 34.285713 1 AGGGCGA 1425 0.0 34.245613 6 TTAACGG 95 0.0 33.68421 2 CACGACC 315 0.0 33.65079 27 ACCGCTA 90 0.0 33.333336 26 >>END_MODULE