##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3553767_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 739078 Sequences flagged as poor quality 0 Sequence length 46 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.859083885598 31.0 31.0 34.0 30.0 34.0 2 32.02948132673412 33.0 31.0 34.0 30.0 34.0 3 31.817791897472254 33.0 31.0 34.0 30.0 34.0 4 35.67471633575888 37.0 35.0 37.0 33.0 37.0 5 35.5361206800906 37.0 35.0 37.0 33.0 37.0 6 35.54001607408149 37.0 35.0 37.0 33.0 37.0 7 35.8373486966193 37.0 35.0 37.0 35.0 37.0 8 35.65896021800135 37.0 35.0 37.0 35.0 37.0 9 37.433188377951986 39.0 37.0 39.0 35.0 39.0 10 36.98148098035661 39.0 37.0 39.0 33.0 39.0 11 36.944208865640704 39.0 37.0 39.0 33.0 39.0 12 36.9689261485256 39.0 37.0 39.0 33.0 39.0 13 35.25363087522562 39.0 35.0 39.0 30.0 39.0 14 37.1379705524992 40.0 37.0 41.0 31.0 41.0 15 37.796599276395725 40.0 37.0 41.0 32.0 41.0 16 37.977113376396 40.0 37.0 41.0 33.0 41.0 17 38.01084188678326 40.0 37.0 41.0 33.0 41.0 18 37.96212307767245 39.0 37.0 41.0 33.0 41.0 19 37.84532890980384 39.0 37.0 41.0 33.0 41.0 20 37.7009233125597 39.0 36.0 41.0 33.0 41.0 21 37.560909673945105 39.0 35.0 41.0 33.0 41.0 22 37.54958881200631 39.0 35.0 41.0 33.0 41.0 23 37.47512441176709 39.0 35.0 41.0 33.0 41.0 24 37.39509226360411 39.0 35.0 41.0 33.0 41.0 25 37.19308516827723 39.0 35.0 41.0 32.0 41.0 26 37.189051764495765 39.0 35.0 41.0 32.0 41.0 27 37.152952732999765 39.0 35.0 41.0 32.0 41.0 28 36.99564322033669 39.0 35.0 41.0 32.0 41.0 29 36.91026928145608 39.0 35.0 41.0 32.0 41.0 30 36.71901747853406 39.0 35.0 40.0 31.0 41.0 31 36.572674332073206 39.0 35.0 40.0 31.0 41.0 32 36.302275267292494 39.0 35.0 40.0 30.0 41.0 33 35.99441736866745 39.0 35.0 40.0 29.0 41.0 34 35.698850459626726 39.0 35.0 40.0 27.0 41.0 35 35.50712509369782 39.0 35.0 40.0 26.0 41.0 36 35.30562674034405 38.0 35.0 40.0 25.0 41.0 37 35.19490094414933 38.0 35.0 40.0 24.0 41.0 38 35.055366280690265 38.0 34.0 40.0 24.0 41.0 39 34.941726042447485 38.0 34.0 40.0 23.0 41.0 40 34.79530036071971 38.0 34.0 40.0 23.0 41.0 41 34.706615539902415 38.0 34.0 40.0 23.0 41.0 42 34.607067183707265 38.0 34.0 40.0 23.0 41.0 43 34.54775138753961 38.0 34.0 40.0 22.0 41.0 44 34.425504479906046 38.0 34.0 40.0 22.0 41.0 45 34.34376885795545 37.0 33.0 40.0 22.0 41.0 46 33.474374829179055 36.0 32.0 40.0 20.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 3.0 9 14.0 10 29.0 11 26.0 12 14.0 13 13.0 14 17.0 15 36.0 16 43.0 17 97.0 18 205.0 19 347.0 20 659.0 21 1196.0 22 1758.0 23 2807.0 24 4030.0 25 5967.0 26 8798.0 27 12839.0 28 15588.0 29 16518.0 30 17255.0 31 19533.0 32 23841.0 33 31247.0 34 45946.0 35 60146.0 36 73118.0 37 101082.0 38 147415.0 39 148491.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 30.405045204971596 21.10967989846809 20.66899569463575 27.81627920192456 2 30.521000489799455 25.055136264372635 21.946398079769658 22.47746516605825 3 26.14974332885027 24.913337969740677 27.958483407705277 20.978435293703775 4 23.42039676461754 26.372182638368347 26.953718010818882 23.25370258619523 5 20.663312938553172 30.08884042009098 25.5660430969397 23.68180354441615 6 19.4827880142556 37.051840265844746 25.99454996630938 17.470821753590286 7 78.21204257196128 5.679914704537275 12.413439447527866 3.6946032759735776 8 77.83089200327976 5.294434416935696 12.508693263769183 4.365980316015359 9 70.17229575227513 7.851133439231043 15.766400839965469 6.210169968528356 10 32.50834147410693 26.186140028522026 22.790693269181332 18.514825228189718 11 26.95926546318521 26.469601314069692 28.270899688530843 18.30023353421425 12 22.006743537217993 24.26672150977299 33.47008028922522 20.256454663783796 13 21.258919897493904 26.52602296374672 33.63866871967505 18.57638841908432 14 20.89982383456144 26.019581153815967 32.69289574307448 20.38769926854811 15 20.25117781884997 24.40933162670246 35.27354352314641 20.065947031301164 16 21.74114234221557 24.549370973023148 33.7718075764669 19.937679108294386 17 21.65360083780061 24.631365025071776 31.359342315696043 22.355691821431567 18 22.895553649276533 24.39214805473847 31.2984556433827 21.4138426526023 19 24.157396107041475 26.347692665726758 29.748957484866278 19.745953742365487 20 26.190605051158332 24.05835378674511 29.26944111446965 20.48160004762691 21 25.760745144626142 25.963565415287697 29.22303193979526 19.052657500290906 22 24.398372025686058 24.369281726691906 29.37010707936104 21.862239168260995 23 23.114069151023305 26.057601498082743 29.485927060472644 21.342402290421308 24 21.318182925212223 25.21222387894106 31.706666955314596 21.76292624053212 25 22.637123551235458 26.109828732555968 29.903880239974672 21.3491674762339 26 21.620451427318905 26.287753119427176 30.741139636141245 21.350655817112674 27 22.527798148503948 25.24997361577533 30.387320418142604 21.834907817578117 28 21.817318334465373 26.33253864950655 31.164369660577094 20.68577335545098 29 22.357856680891597 26.034329258887425 29.51961768581936 22.08819637440162 30 22.62291666102901 25.397184059057366 30.51274696310809 21.46715231680553 31 22.793940558371375 26.755362762793645 28.26968195508458 22.1810147237504 32 22.862404238794824 26.27557578496451 29.536801257783345 21.32521871845732 33 22.996219614167924 27.645931823163455 27.08793929734074 22.269909265327883 34 22.11349816934072 27.556225459288463 28.1917470145235 22.138529356847314 35 23.498872920043624 27.203218063587336 27.503592313666488 21.794316702702556 36 23.588038069053603 29.526518175348205 25.765616078411206 21.11982767718698 37 24.216388527327293 29.62312502875204 25.923786122709647 20.236700321211025 38 23.824413661345623 28.60834715686301 26.868611973296456 20.69862720849491 39 24.519874762880235 27.042477248680115 26.5929983032914 21.84464968514825 40 24.276733984775625 26.62628301748936 28.74365087311488 20.353332124620135 41 22.310770987635948 27.121224011538704 28.017746435423597 22.550258565401755 42 23.130440900689777 26.933422453381105 27.973637423925485 21.962499222003633 43 23.286987300393193 25.523016515171605 28.86434178801155 22.32565439642365 44 23.55001772478683 27.05681944260281 27.43025769945797 21.96290513315239 45 22.863892579673593 26.232549203196413 28.108399925312348 22.795158291817643 46 22.604515355618755 26.92814560844728 27.855923190786356 22.611415845147604 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 2516.0 1 2329.0 2 2142.0 3 11118.5 4 20095.0 5 13658.5 6 7222.0 7 7222.0 8 6736.5 9 6251.0 10 6062.5 11 5874.0 12 5687.5 13 5501.0 14 5297.5 15 5094.0 16 4733.0 17 4372.0 18 4266.0 19 4160.0 20 4160.0 21 4073.5 22 3987.0 23 4183.0 24 4379.0 25 5367.0 26 6355.0 27 6985.0 28 7615.0 29 9058.0 30 10501.0 31 10501.0 32 11825.0 33 13149.0 34 14838.5 35 16528.0 36 18629.0 37 20730.0 38 23715.0 39 26700.0 40 29718.0 41 32736.0 42 37008.5 43 41281.0 44 41281.0 45 45592.5 46 49904.0 47 53898.0 48 57892.0 49 58661.0 50 59430.0 51 57121.5 52 54813.0 53 50368.0 54 45923.0 55 44469.5 56 43016.0 57 43016.0 58 41690.5 59 40365.0 60 37839.0 61 35313.0 62 32373.0 63 29433.0 64 26592.0 65 23751.0 66 20286.5 67 16822.0 68 14551.5 69 12281.0 70 12281.0 71 10530.5 72 8780.0 73 7216.5 74 5653.0 75 4788.5 76 3924.0 77 3132.5 78 2341.0 79 1729.5 80 1118.0 81 1118.0 82 919.0 83 720.0 84 523.0 85 326.0 86 192.5 87 59.0 88 36.5 89 14.0 90 10.0 91 6.0 92 4.0 93 2.0 94 2.0 95 2.5 96 3.0 97 2.0 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 46 739078.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 36.24932661103614 #Duplication Level Percentage of deduplicated Percentage of total 1 75.06066466732084 27.208985491671733 2 8.907262770284166 6.457645547407067 3 3.6144559891223498 3.9306478701273533 4 2.026296347616338 2.9380751246197696 5 1.3213763279519242 2.3949501044010457 6 1.0370695081665742 2.2555842791926057 7 0.8362651496093887 2.121983397913241 8 0.6834744388725003 1.9820390531987135 9 0.5826861946533315 1.9009783963557352 >10 5.777808760457204 41.49731290864669 >50 0.12054442696172792 2.777097925388594 >100 0.029483001159375334 2.215942254762779 >500 0.001866012731606031 0.3810933657916205 >1k 3.7320254632120626E-4 0.3010055871091074 >5k 0.0 0.0 >10k+ 3.7320254632120626E-4 1.6366586934139244 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 12098 1.6369043592151304 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 2225 0.301050768660412 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.06332213920587543 0.0 2 0.0 0.0 0.0 0.2574829720273097 0.0 3 0.0 0.0 0.0 0.440142988967335 0.0 4 0.0 0.0 0.0 0.6038604856320984 0.0 5 0.0 0.0 0.0 0.9823049799885804 0.0 6 0.0 0.0 0.0 1.728099063968891 0.0 7 0.0 0.0 0.0 2.263360565461291 0.0 8 0.0 0.0 0.0 3.433873014756223 0.0 9 0.0 0.0 0.0 4.05356403518979 0.0 10 0.0 0.0 0.0 4.943456576978344 0.0 11 0.0 0.0 0.0 5.59643231160987 0.0 12 0.0 0.0 0.0 6.146171310741221 0.0 13 0.0 0.0 0.0 6.465893992244391 0.0 14 0.0 0.0 0.0 6.626228896002858 0.0 15 0.0 0.0 0.0 6.780069221381234 0.0 16 0.0 0.0 0.0 7.089914731598018 0.0 17 0.0 0.0 0.0 7.39746007863852 0.0 18 0.0 0.0 0.0 7.8599281807874135 0.0 19 0.0 0.0 0.0 8.037446656509868 0.0 20 0.0 0.0 0.0 8.246896809267763 0.0 21 0.0 0.0 0.0 8.469877333650846 0.0 22 0.0 0.0 0.0 8.701246688441545 0.0 23 1.353037162518706E-4 0.0 0.0 8.961841645942647 0.0 24 1.353037162518706E-4 0.0 0.0 9.164120701739193 0.0 25 1.353037162518706E-4 0.0 0.0 9.356116675100598 0.0 26 1.353037162518706E-4 0.0 0.0 9.52835830588923 0.0 27 1.353037162518706E-4 0.0 0.0 9.725631124184456 0.0 28 1.353037162518706E-4 0.0 0.0 9.930345646873537 0.0 29 1.353037162518706E-4 0.0 0.0 10.136548510441388 0.0 30 1.353037162518706E-4 0.0 0.0 10.434622597344259 0.0 31 1.353037162518706E-4 0.0 0.0 10.656926603146083 0.0 32 1.353037162518706E-4 0.0 0.0 10.878960001515402 0.0 33 1.353037162518706E-4 0.0 0.0 11.093145784342113 0.0 34 1.353037162518706E-4 0.0 0.0 11.300701685072482 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ATATGCG 30 4.865151E-6 40.000004 1 TACGGGT 110 0.0 40.0 4 CGTTTTT 5980 0.0 38.46154 1 CACGACC 270 0.0 37.03704 27 GCGAGAC 275 0.0 36.363636 21 CGATCGG 55 2.1645974E-10 36.363636 10 TCGACGG 55 2.1645974E-10 36.363636 2 ACGGGTA 95 0.0 35.789474 5 CGATTGT 45 5.4380507E-8 35.555557 10 ACACGAC 300 0.0 35.333332 26 GCGATCG 120 0.0 35.000004 9 ACCGGGT 80 0.0 35.0 4 CTCGTAG 40 8.694333E-7 35.0 1 AGACACG 295 0.0 34.576275 24 CTTAACG 35 1.4003928E-5 34.285713 1 ACGCATG 35 1.4003928E-5 34.285713 1 CTATACG 35 1.4003928E-5 34.285713 1 AAACGCG 35 1.4003928E-5 34.285713 1 CGAATAT 35 1.4003928E-5 34.285713 14 TCGTACG 35 1.4003928E-5 34.285713 30 >>END_MODULE