##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3553766_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 744964 Sequences flagged as poor quality 0 Sequence length 46 %GC 49 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.759105137966397 31.0 31.0 34.0 30.0 34.0 2 31.908339194914117 33.0 31.0 34.0 30.0 34.0 3 31.881355340660757 33.0 31.0 34.0 30.0 34.0 4 35.62760079681703 37.0 35.0 37.0 33.0 37.0 5 35.43704393769363 37.0 35.0 37.0 33.0 37.0 6 35.43766544423623 37.0 35.0 37.0 33.0 37.0 7 35.72570083923519 37.0 35.0 37.0 35.0 37.0 8 35.49634210512186 37.0 35.0 37.0 33.0 37.0 9 37.23024602531129 39.0 37.0 39.0 34.0 39.0 10 36.76832437540606 39.0 37.0 39.0 32.0 39.0 11 36.749720791877195 39.0 37.0 39.0 32.0 39.0 12 36.75075439887028 39.0 35.0 39.0 32.0 39.0 13 35.07237933645116 39.0 35.0 39.0 30.0 39.0 14 36.86871848841018 39.0 36.0 41.0 30.0 41.0 15 37.508910497688476 40.0 36.0 41.0 32.0 41.0 16 37.70419241735171 40.0 36.0 41.0 33.0 41.0 17 37.75496802530055 39.0 36.0 41.0 33.0 41.0 18 37.788161575592916 39.0 37.0 41.0 33.0 41.0 19 37.75743660096327 39.0 36.0 41.0 33.0 41.0 20 37.7012540203285 39.0 36.0 41.0 33.0 41.0 21 37.56263255674099 39.0 36.0 41.0 32.0 41.0 22 37.55434490794186 39.0 36.0 41.0 32.0 41.0 23 37.47894126427586 39.0 36.0 41.0 32.0 41.0 24 37.42329696468554 39.0 36.0 41.0 32.0 41.0 25 37.18333503363921 39.0 35.0 41.0 32.0 41.0 26 37.19329256178822 39.0 35.0 41.0 32.0 41.0 27 37.15812307708829 39.0 35.0 41.0 32.0 41.0 28 37.00693053624068 39.0 35.0 41.0 31.0 41.0 29 36.94256635219957 39.0 35.0 41.0 31.0 41.0 30 36.82543451764112 39.0 35.0 41.0 31.0 41.0 31 36.77196213508304 39.0 35.0 41.0 31.0 41.0 32 36.62539934815642 39.0 35.0 40.0 30.0 41.0 33 36.49552193126111 39.0 35.0 40.0 30.0 41.0 34 36.39945957120076 39.0 35.0 40.0 30.0 41.0 35 36.29017912274956 39.0 35.0 40.0 30.0 41.0 36 36.13459576570143 38.0 35.0 40.0 30.0 41.0 37 36.091342668907494 38.0 35.0 40.0 30.0 41.0 38 35.952305077829266 38.0 35.0 40.0 29.0 41.0 39 35.84942896569498 38.0 35.0 40.0 29.0 41.0 40 35.76213481456822 38.0 35.0 40.0 28.0 41.0 41 35.65960771258745 38.0 35.0 40.0 28.0 41.0 42 35.613624282515666 38.0 34.0 40.0 28.0 41.0 43 35.52283868750705 38.0 34.0 40.0 28.0 41.0 44 35.40778346336199 38.0 34.0 40.0 27.0 41.0 45 35.340231205803235 38.0 34.0 40.0 27.0 41.0 46 34.392112907469354 37.0 33.0 40.0 24.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 3.0 8 7.0 9 23.0 10 34.0 11 34.0 12 23.0 13 12.0 14 18.0 15 32.0 16 63.0 17 89.0 18 188.0 19 364.0 20 687.0 21 1127.0 22 1656.0 23 2505.0 24 3416.0 25 4753.0 26 6309.0 27 8165.0 28 10376.0 29 12505.0 30 15609.0 31 19661.0 32 25711.0 33 34210.0 34 50975.0 35 65811.0 36 74976.0 37 103057.0 38 150602.0 39 151963.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 32.68117654007442 23.22796806288626 20.513877180642286 23.576978216397034 2 24.294731020559382 28.65078044039712 23.319381876171196 23.735106662872298 3 27.84872826069448 27.397833989293442 22.811840572161877 21.941597177850205 4 25.32014969850892 28.018400889170486 21.64869711825001 25.012752294070584 5 21.646415128784746 32.77138224128951 20.44085351775388 25.141349112171863 6 20.298564762861023 40.29429610021424 21.148941425357467 18.25819771156727 7 81.14405528320832 6.974699448563958 7.338609650936152 4.542635617291574 8 80.30388045596834 7.0521528557084645 7.228268748556978 5.415697939766217 9 72.05985792602058 9.941688457428816 10.837704909230512 7.160748707320086 10 34.40797139190618 27.88658243888295 18.13792344328048 19.56752272593038 11 29.21094173678191 27.875038256882213 23.44328048066752 19.470739525668353 12 24.650989846489228 24.39768901584506 29.75915614714268 21.192164990523032 13 22.535182908167375 28.271299015791367 29.581295203526615 19.612222872514646 14 21.012424761464985 28.233310602928462 28.36835068540225 22.385913950204305 15 19.616652616770743 25.701913112579938 33.25811717076262 21.423317099886706 16 21.774877712211595 25.715470814697085 30.55409388910068 21.955557583990636 17 21.14491438512465 26.831497897884997 26.603298951358724 25.420288765631625 18 23.116821752460524 25.366729130535166 28.32378477349241 23.1926643435119 19 25.370621936093556 27.32319951031191 25.584189303107262 21.721989250487272 20 26.342480978946636 25.63358766329648 25.325384850811584 22.698546506945302 21 25.576940630688195 28.212638463066668 25.146584264474527 21.06383664177061 22 24.399299831938187 26.186768756611055 24.6207870447431 24.793144366707654 23 23.078564870248762 28.214383513834225 25.36310479432563 23.34394682159138 24 22.213825097588607 26.154552434748524 27.596904011469007 24.034718456193858 25 22.77787919953179 27.995178290494575 25.667146331903286 23.55979617807035 26 21.405598122862312 28.01679007307736 26.58410339291563 23.9935084111447 27 23.384888397291682 26.94989288072981 25.559624357687085 24.10559436429143 28 22.56189560837839 28.18404647741367 27.33890496721989 21.91515294698804 29 22.91466433277313 27.487100047787543 25.51438727240511 24.08384834703422 30 23.56556826907072 27.177823357907226 24.847509409850677 24.409098963171374 31 25.512373752288703 27.206146874211374 23.44234083794653 23.839138535553396 32 24.628304186511027 28.45036807147728 23.003661921918376 23.91766582009332 33 24.081029418871246 29.01979156039755 23.34824233117305 23.550936689558153 34 23.44328048066752 27.901348253069948 24.227613683345773 24.427757582916758 35 23.950150611304707 28.76340333224156 23.36864600168599 23.917800054767746 36 24.595013987253076 30.43059798862764 22.58270198291461 22.391686041204675 37 23.404620894432483 30.147228590911773 23.45750935615681 22.990641158498935 38 22.33597865131738 31.720324740524376 23.5191230717189 22.424573536439343 39 23.07010808575985 28.697494107097793 24.0161940711229 24.21620373601946 40 22.419741088159963 27.56804355646716 27.135942139485934 22.87627321588694 41 20.89228472785262 27.713688178220693 26.27415552966318 25.11987156426351 42 22.835868578884348 27.73744771559431 25.78527284539924 23.6414108601221 43 23.100445122180403 26.501817537491746 27.097819491948606 23.299917848379252 44 23.50892123646243 27.56321110818778 25.871451506381515 23.056416148968275 45 22.18577005063332 27.08359061645932 26.540745593075638 24.18989373983172 46 22.716265483969693 27.773019904317525 25.680167095322727 23.830547516390055 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 4747.0 1 4210.5 2 3674.0 3 4716.5 4 5759.0 5 4059.5 6 2360.0 7 2360.0 8 2308.0 9 2256.0 10 2306.0 11 2356.0 12 2289.5 13 2223.0 14 2291.0 15 2359.0 16 2204.5 17 2050.0 18 2190.0 19 2330.0 20 2330.0 21 2337.5 22 2345.0 23 2984.0 24 3623.0 25 4741.0 26 5859.0 27 6305.0 28 6751.0 29 8345.5 30 9940.0 31 9940.0 32 11533.5 33 13127.0 34 14397.0 35 15667.0 36 17939.0 37 20211.0 38 23689.0 39 27167.0 40 29657.5 41 32148.0 42 36844.0 43 41540.0 44 41540.0 45 48571.0 46 55602.0 47 61607.5 48 67613.0 49 68315.5 50 69018.0 51 64826.5 52 60635.0 53 54456.5 54 48278.0 55 47032.0 56 45786.0 57 45786.0 58 44415.0 59 43044.0 60 40421.5 61 37799.0 62 34533.0 63 31267.0 64 27865.0 65 24463.0 66 20915.0 67 17367.0 68 15127.5 69 12888.0 70 12888.0 71 10842.0 72 8796.0 73 7354.0 74 5912.0 75 4873.0 76 3834.0 77 2994.0 78 2154.0 79 1553.0 80 952.0 81 952.0 82 827.0 83 702.0 84 450.0 85 198.0 86 141.0 87 84.0 88 61.0 89 38.0 90 34.5 91 31.0 92 19.0 93 7.0 94 7.0 95 5.0 96 3.0 97 2.0 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 46 744964.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 30.362446793026983 #Duplication Level Percentage of deduplicated Percentage of total 1 74.66185551433551 22.669166155226797 2 9.17942828794639 5.57419805966358 3 3.603069268132955 3.281939968358326 4 1.9473700509025442 2.3650767822745102 5 1.1927397743258425 1.8107248967947704 6 0.8916947786365629 1.6244421163183569 7 0.7046973594327222 1.4977435256673848 8 0.5643409660965238 1.3707818044984919 9 0.4980405266097097 1.3609556090962605 >10 6.151355330429347 43.01919008354515 >50 0.5463764107284271 10.385914507871618 >100 0.05281786585255102 2.965594470132352 >500 0.005326171346475733 1.1062694267616322 >1k 8.87695224412622E-4 0.9680025937908154 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 4275 0.5738532331763683 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2908 0.39035443323435765 No Hit CCTGTCTCTTATACACATCTGACGCCGGAACAATCGTATGCCGTCT 954 0.12805987940356847 No Hit CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 898 0.12054273763564415 No Hit GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 897 0.12040850296121691 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.08054080465633238 0.0 2 0.0 0.0 0.0 0.42082570432933675 0.0 3 0.0 0.0 0.0 0.619895726504905 0.0 4 0.0 0.0 0.0 0.8360135523327302 0.0 5 0.0 0.0 0.0 1.445573208906739 0.0 6 0.0 0.0 0.0 2.3786384308503496 0.0 7 0.0 0.0 0.0 3.0731686363367894 0.0 8 0.0 0.0 0.0 4.615390810831127 0.0 9 0.0 0.0 0.0 5.3856293726945195 0.0 10 0.0 0.0 0.0 6.583539607283036 0.0 11 0.0 0.0 0.0 7.489489424992349 0.0 12 0.0 0.0 0.0 8.341208434233064 0.0 13 0.0 0.0 0.0 8.835326270799662 0.0 14 0.0 0.0 0.0 9.03493323167294 1.3423467442722064E-4 15 0.0 0.0 0.0 9.305013396620508 1.3423467442722064E-4 16 0.0 0.0 0.0 9.805037558861905 1.3423467442722064E-4 17 0.0 0.0 0.0 10.31861942322045 1.3423467442722064E-4 18 0.0 0.0 0.0 11.11838961345783 1.3423467442722064E-4 19 0.0 0.0 0.0 11.399745491057287 1.3423467442722064E-4 20 0.0 0.0 0.0 11.742849318893262 1.3423467442722064E-4 21 0.0 0.0 0.0 12.089174778915492 1.3423467442722064E-4 22 0.0 0.0 0.0 12.4432858500545 1.3423467442722064E-4 23 0.0 0.0 0.0 12.781020290913386 1.3423467442722064E-4 24 0.0 0.0 0.0 13.050966221186528 1.3423467442722064E-4 25 0.0 0.0 0.0 13.315811233831434 1.3423467442722064E-4 26 0.0 0.0 0.0 13.535284926519939 1.3423467442722064E-4 27 0.0 0.0 0.0 13.788183053140823 1.3423467442722064E-4 28 0.0 0.0 0.0 14.035711792784618 1.3423467442722064E-4 29 0.0 0.0 0.0 14.287536042010084 1.3423467442722064E-4 30 0.0 0.0 0.0 14.649566958940298 1.3423467442722064E-4 31 0.0 0.0 0.0 14.910384931352388 1.3423467442722064E-4 32 0.0 0.0 0.0 15.17106866909005 1.3423467442722064E-4 33 0.0 0.0 0.0 15.436047916409384 1.3423467442722064E-4 34 0.0 0.0 0.0 15.682368543983333 1.3423467442722064E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TTGTGCG 30 4.8652055E-6 40.0 1 GACGTAC 20 0.0012554844 40.0 33 GCGCCTA 20 0.0012554844 40.0 18 GCGTTCC 30 4.8652055E-6 40.0 29 CGTTATC 20 0.0012554844 40.0 17 AATTCGT 20 0.0012554844 40.0 31 TCGTACA 20 0.0012554844 40.0 34 CGTGTAA 20 0.0012554844 40.0 11 GTATACG 30 4.8652055E-6 40.0 1 TTACCGG 45 1.2205419E-9 40.0 2 CTAGGCG 25 7.79201E-5 40.0 1 TACGCAT 85 0.0 37.647057 16 TATACGG 55 2.1645974E-10 36.363636 2 TCGATCA 160 0.0 36.25 17 TATTACG 45 5.4380507E-8 35.555557 1 GCGCGAC 175 0.0 35.42857 9 TAGGGCC 175 0.0 35.42857 5 CTCGATC 165 0.0 35.151516 16 CTTAACG 40 8.69446E-7 35.0 1 CGTAAGG 40 8.69446E-7 35.0 2 >>END_MODULE