##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3553763_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 442650 Sequences flagged as poor quality 0 Sequence length 46 %GC 50 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.80798825256975 31.0 31.0 34.0 30.0 34.0 2 31.951998192703037 33.0 31.0 34.0 30.0 34.0 3 31.924190669829436 33.0 31.0 34.0 30.0 34.0 4 35.6697503671072 37.0 35.0 37.0 33.0 37.0 5 35.47202982039986 37.0 35.0 37.0 33.0 37.0 6 35.46679091833277 37.0 35.0 37.0 33.0 37.0 7 35.746897097029255 37.0 35.0 37.0 35.0 37.0 8 35.57426183214729 37.0 35.0 37.0 35.0 37.0 9 37.355359765051396 39.0 37.0 39.0 35.0 39.0 10 36.77549757144471 39.0 37.0 39.0 32.0 39.0 11 36.73470010166045 39.0 37.0 39.0 32.0 39.0 12 36.686639557212246 39.0 35.0 39.0 32.0 39.0 13 35.004348808313566 39.0 35.0 39.0 30.0 39.0 14 36.75447644866147 39.0 36.0 41.0 30.0 41.0 15 37.39174743024963 39.0 36.0 41.0 32.0 41.0 16 37.612032079521065 39.0 36.0 41.0 33.0 41.0 17 37.66101208629843 39.0 36.0 41.0 33.0 41.0 18 37.70417937422343 39.0 36.0 41.0 33.0 41.0 19 37.6628013102903 39.0 36.0 41.0 33.0 41.0 20 37.629908505591324 39.0 36.0 41.0 33.0 41.0 21 37.49648480740992 39.0 36.0 41.0 32.0 41.0 22 37.46989269174291 39.0 35.0 41.0 32.0 41.0 23 37.3973206822546 39.0 35.0 41.0 32.0 41.0 24 37.33059076019428 39.0 35.0 41.0 32.0 41.0 25 37.146736699423926 39.0 35.0 41.0 32.0 41.0 26 37.09443804360104 39.0 35.0 41.0 32.0 41.0 27 37.0637817688919 39.0 35.0 41.0 32.0 41.0 28 36.93898339545917 39.0 35.0 41.0 31.0 41.0 29 36.86123348017621 39.0 35.0 40.0 31.0 41.0 30 36.71696374110471 39.0 35.0 40.0 31.0 41.0 31 36.651733875522424 39.0 35.0 40.0 31.0 41.0 32 36.548467186264546 39.0 35.0 40.0 30.0 41.0 33 36.432736925336044 39.0 35.0 40.0 30.0 41.0 34 36.33912346097368 39.0 35.0 40.0 30.0 41.0 35 36.23189427312775 38.0 35.0 40.0 30.0 41.0 36 36.091706766068 38.0 35.0 40.0 30.0 41.0 37 36.009802326894835 38.0 35.0 40.0 30.0 41.0 38 35.9015881622049 38.0 35.0 40.0 29.0 41.0 39 35.81599457810911 38.0 35.0 40.0 29.0 41.0 40 35.70385180164916 38.0 35.0 40.0 28.0 41.0 41 35.59373319778606 38.0 34.0 40.0 28.0 41.0 42 35.548187055235516 38.0 34.0 40.0 28.0 41.0 43 35.46584660567039 38.0 34.0 40.0 28.0 41.0 44 35.32472834067548 38.0 34.0 40.0 27.0 41.0 45 35.241104710267706 38.0 34.0 40.0 27.0 41.0 46 34.261140856206936 36.0 33.0 40.0 24.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 4.0 9 18.0 10 17.0 11 20.0 12 10.0 13 11.0 14 7.0 15 24.0 16 32.0 17 72.0 18 140.0 19 263.0 20 465.0 21 694.0 22 1069.0 23 1524.0 24 2115.0 25 2790.0 26 3727.0 27 4817.0 28 6135.0 29 7582.0 30 9439.0 31 11697.0 32 15280.0 33 20988.0 34 31680.0 35 40753.0 36 44108.0 37 60783.0 38 87786.0 39 88600.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 34.048571105839834 21.348469445385746 20.64226815768666 23.960691291087766 2 23.716480289167514 28.459279340336607 24.068677284536317 23.75556308595956 3 27.915734779170904 27.871004179374225 23.150570428103467 21.062690613351407 4 25.59923189879137 28.80718400542189 21.151699988704394 24.441884107082345 5 22.063029481531686 33.41059527843669 19.65774313791935 24.86863210211228 6 19.83937648254829 41.371964305885015 20.620128769908504 18.168530441658195 7 83.09477013441771 6.786626002485033 6.332090816672315 3.7865130464249406 8 83.53507285665877 5.798486388794759 6.36417033773862 4.302270416807861 9 77.67174968937084 7.780639331300124 9.048909974020106 5.498701005308935 10 36.7947588388117 27.926126736699423 16.665763018185924 18.613351406302947 11 30.349034225686207 28.089235287473173 22.314017847057492 19.247712639783124 12 25.534395120298203 24.849429571896533 28.61696600022591 20.999209307579353 13 22.804021235739295 28.66869987574833 28.525923415791254 20.001355472721112 14 21.137015700892352 28.975714447080087 27.709928837682142 22.17734101434542 15 20.550773749011633 27.295380097142214 31.294702360781656 20.859143793064497 16 22.514175985541623 25.702021913475658 29.33739975149667 22.44640234948605 17 21.76143680108438 26.023720772619452 26.408675025415114 25.80616740088106 18 23.26849655484017 26.038179148311308 27.377838021009826 23.315486275838698 19 24.889190105049135 27.365638766519822 25.7090251892014 22.03614593922964 20 27.06788659211567 25.547949847509322 24.129673556986333 23.254490003388682 21 26.648367784931658 27.446741217666325 24.785270529763924 21.11962046763809 22 24.60047441545239 25.134078843329945 24.793177453970404 25.47226928724726 23 23.315712187958884 27.774539704055123 25.062238789111035 23.847509318874955 24 22.535411724839037 26.470349034225688 27.865808200609965 23.128431040325314 25 23.856093979441997 26.896871117135433 25.798712300914943 23.448322602507623 26 22.473285891788095 27.5788998079747 25.728001807296963 24.219812492940246 27 23.33401106969389 27.02744832260251 25.67333107421213 23.96520953349147 28 22.826160623517453 27.682141646899357 27.222410482322378 22.269287247260817 29 23.061561052750477 27.25946007003276 25.607138822997854 24.07184005421891 30 24.169885914379307 26.19496215971987 26.456568394894386 23.17858353100644 31 25.671071953010276 26.86049926578561 24.56229526714108 22.90613351406303 32 25.968598215294254 27.326104145487406 24.27583869874619 22.429458940472156 33 24.30565909861064 26.307918219812493 24.432847622274938 24.953575059301933 34 23.926578560939795 26.956060092623968 25.09838472834068 24.01897661809556 35 24.97164802891675 26.626454309273694 24.753416920817802 23.648480740991754 36 25.302609284988144 28.10979329041003 23.961369027448324 22.626228397153508 37 24.374336383146954 28.006777363605558 24.88806054444821 22.730825708799276 38 23.7090251892014 28.87224669603524 24.651530554614254 22.767197560149103 39 23.800067773636055 26.799051169095222 24.607477691178133 24.79340336609059 40 24.124251666101888 26.770812154072065 26.479385519033094 22.62555066079295 41 21.33920704845815 26.838133965887266 26.570654015587934 25.252004970066643 42 23.909409239805715 26.316502880379534 25.452389020670957 24.321698859143794 43 23.53213599909635 25.17225799164125 26.66418163334463 24.631424375917767 44 23.94871794871795 25.93471139726646 26.239240935276175 23.87732971873941 45 24.083135660228173 25.637636959222863 25.706540155879367 24.572687224669604 46 23.709928837682142 26.73172935728002 26.00090364848074 23.5574381565571 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 3303.0 1 3132.0 2 2961.0 3 2807.0 4 2653.0 5 1953.0 6 1253.0 7 1253.0 8 1236.5 9 1220.0 10 1279.0 11 1338.0 12 1384.0 13 1430.0 14 1336.5 15 1243.0 16 1237.5 17 1232.0 18 1255.0 19 1278.0 20 1278.0 21 1212.5 22 1147.0 23 1465.0 24 1783.0 25 2211.5 26 2640.0 27 2996.0 28 3352.0 29 4507.5 30 5663.0 31 5663.0 32 6861.5 33 8060.0 34 9231.5 35 10403.0 36 11278.5 37 12154.0 38 13192.0 39 14230.0 40 16132.0 41 18034.0 42 20492.5 43 22951.0 44 22951.0 45 25571.0 46 28191.0 47 30307.0 48 32423.0 49 35138.5 50 37854.0 51 39354.0 52 40854.0 53 38099.0 54 35344.0 55 31862.5 56 28381.0 57 28381.0 58 26737.0 59 25093.0 60 23383.0 61 21673.0 62 20465.0 63 19257.0 64 17592.5 65 15928.0 66 14161.0 67 12394.0 68 11213.5 69 10033.0 70 10033.0 71 8121.0 72 6209.0 73 5243.0 74 4277.0 75 3628.5 76 2980.0 77 2514.5 78 2049.0 79 1426.0 80 803.0 81 803.0 82 570.5 83 338.0 84 246.0 85 154.0 86 95.0 87 36.0 88 36.5 89 37.0 90 24.0 91 11.0 92 6.5 93 2.0 94 2.0 95 1.5 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 46 442650.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 30.715484081535216 #Duplication Level Percentage of deduplicated Percentage of total 1 74.90446158398281 23.007267974187897 2 8.470498945422138 5.203509510415491 3 3.2015203537550634 2.950087423874239 4 1.774305763770909 2.1799464177152617 5 1.1349679132220736 1.7430544435812922 6 0.8810133463364008 1.6236450849009474 7 0.7777752040406087 1.6722819329105485 8 0.5860844202803263 1.4401493345244927 9 0.6014796215377392 1.6627263966639227 >10 7.363857305322481 50.07641391542157 >50 0.26133805696598117 4.8990334846160435 >100 0.03828050411896062 1.9914053308877273 >500 0.002208490622247728 0.41627991531330827 >1k 0.002208490622247728 1.1341988349872645 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 2921 0.6598893030611093 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1070 0.24172596859821527 No Hit CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1025 0.2315599231898791 No Hit GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 670 0.1513611205241161 No Hit CCTGTCTCTTATACACATCTGACGCGTGGCAACTCGTATGCCGTCT 629 0.14209872359652095 No Hit ATTCCTCCAGATCTCTACGCATTTCACCGCTACACCTGGAATTCTA 542 0.12244436914040438 No Hit GCTGTCTCTTATACACATCTGACGCGTGGCAACTCGTATGCCGTCT 471 0.10640460860725177 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.09601265107873037 0.0 2 0.0 0.0 0.0 0.45679430701457135 0.0 3 0.0 0.0 0.0 0.6083813396588726 0.0 4 0.0 0.0 0.0 0.7875296509657743 0.0 5 0.0 0.0 0.0 1.328363266689258 0.0 6 0.0 0.0 0.0 2.095334914718175 0.0 7 0.0 0.0 0.0 2.5814977973568283 0.0 8 0.0 0.0 0.0 3.5949395685078502 0.0 9 0.0 0.0 0.0 4.044730599796679 0.0 10 0.0 0.0 0.0 4.838811702247826 0.0 11 0.0 0.0 0.0 5.607364735118039 0.0 12 0.0 0.0 0.0 6.296622613803231 0.0 13 0.0 0.0 0.0 6.620806506269061 0.0 14 0.0 0.0 0.0 6.764712526827064 0.0 15 0.0 0.0 0.0 6.946797695696374 0.0 16 0.0 0.0 0.0 7.367446063481306 0.0 17 0.0 0.0 0.0 7.842539252230882 0.0 18 0.0 0.0 0.0 8.490907037162543 0.0 19 0.0 0.0 0.0 8.735569863323168 0.0 20 0.0 0.0 0.0 9.007793968146391 0.0 21 0.0 0.0 0.0 9.311871681915735 0.0 22 0.0 0.0 0.0 9.606009262396928 0.0 23 0.0 0.0 0.0 9.934033660905907 0.0 24 0.0 0.0 0.0 10.179600135547272 0.0 25 0.0 0.0 0.0 10.417937422342709 0.0 26 0.0 0.0 0.0 10.622839715350729 0.0 27 0.0 0.0 0.0 10.843329944651531 0.0 28 0.0 0.0 0.0 11.057494634587146 0.0 29 0.0 0.0 0.0 11.291765503219247 0.0 30 0.0 0.0 0.0 11.579125720094883 0.0 31 0.0 0.0 0.0 11.846831582514401 0.0 32 0.0 0.0 0.0 12.0964644753191 0.0 33 0.0 0.0 0.0 12.329605783350276 0.0 34 0.0 0.0 0.0 12.558228848977748 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GATCGAG 20 0.0012549325 40.0 9 CTATACG 35 3.0507E-7 40.0 1 CGTTGAT 45 1.2187229E-9 40.0 25 ATTACGG 25 7.78688E-5 40.0 2 GCCGATG 40 1.9237632E-8 40.0 9 ATATCAT 30 4.8607253E-6 40.0 28 CTAGTAC 25 7.78688E-5 40.0 23 TTGACGT 30 4.8607253E-6 40.0 18 TGTTCGA 30 4.8607253E-6 40.0 38 ACGTCTA 20 0.0012549325 40.0 28 TTACGGG 90 0.0 40.0 3 TACTACG 25 7.78688E-5 40.0 1 TTCGACG 20 0.0012549325 40.0 25 GTGCGAT 20 0.0012549325 40.0 30 TCGAACG 20 0.0012549325 40.0 1 GCGTAAG 25 7.78688E-5 40.0 1 AAGTCGA 30 4.8607253E-6 40.0 33 TAATCGT 50 7.8216544E-11 40.0 21 CGTAAGG 65 0.0 39.999996 2 GCGAGAC 165 0.0 37.57576 21 >>END_MODULE