SRR3553761_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553761_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1296478
Sequences flagged as poor quality	0
Sequence length	46
%GC	50

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATCTGTCTCTTATACACATCTGACGCGTTGTCCCTCGTATGCCG	5916	0.456313180786716	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGTTGTCCCTCGTA	4257	0.3283511174119422	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4068	0.31377316082494267	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGTTGTCCCTCG	3923	0.30258901423703294	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3045	0.23486707834610385	No Hit
CCTGTCTCTTATACACATCTGACGCGTTGTCCCTCGTATGCCGTCT	3005	0.23178179652874942	No Hit
GCTGTCTCTTATACACATCTGACGCGTTGTCCCTCGTATGCCGTCT	2677	0.20648248562644334	No Hit
GAACTGTCTCTTATACACATCTGACGCGTTGTCCCTCGTATGCCGT	1525	0.11762636928663657	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AATTGCG	40	1.9286745E-8	40.000004	1
ATACCCG	20	0.001255828	40.000004	1
CCCGATA	20	0.001255828	40.000004	40
TATTGCG	35	3.0567753E-7	40.0	1
CAATACG	25	7.7952085E-5	40.0	1
TACGAGG	230	0.0	36.52174	2
ATCGTAG	50	3.425157E-9	36.0	1
TAGTGCG	50	3.425157E-9	36.0	1
CGTAAGG	230	0.0	35.652176	2
ATTAACG	45	5.4435077E-8	35.555553	1
CTAACGG	135	0.0	35.555553	2
ATAGCGG	220	0.0	35.454544	2
GTATGCG	40	8.701063E-7	35.000004	1
TATAGCG	80	0.0	35.000004	1
ACGTAAG	40	8.701063E-7	35.000004	1
ACTACGG	115	0.0	34.782608	2
TACGAAC	35	1.40120555E-5	34.285713	18
CATCGTT	35	1.40120555E-5	34.285713	36
CTTACCG	35	1.40120555E-5	34.285713	1
AACGGGA	445	0.0	34.157307	4