SRR3553759_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553759_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	880346
Sequences flagged as poor quality	0
Sequence length	46
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	4169	0.47356380332278447	No Hit
GAATCTGTCTCTTATACACATCTGACGCAAGTCTTCTCGTATGCCG	2469	0.2804579108668637	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2305	0.2618288718299396	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCAAGTCTTCTCGTA	2083	0.23661151410922523	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCAAGTCTTCTCG	1869	0.21230289000006816	No Hit
CCTGTCTCTTATACACATCTGACGCAAGTCTTCTCGTATGCCGTCT	1742	0.19787674391659643	No Hit
GCTGTCTCTTATACACATCTGACGCAAGTCTTCTCGTATGCCGTCT	1543	0.17527199532910923	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1359	0.15437112226329194	No Hit
CTGTCTCTTATACACATCTGACGCAAGTCTTCTCGTATGCCGTCTT	951	0.10802570807387096	TruSeq Adapter, Index 23 (95% over 21bp)
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	901	0.10234612300163799	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TATCACG	20	0.0012556084	40.000004	1
TACGGTT	60	0.0	40.000004	33
TCGATAT	20	0.0012556084	40.000004	38
CCGTCAA	20	0.0012556084	40.000004	13
TACGCCA	20	0.0012556084	40.000004	16
TCTACCG	30	4.866213E-6	40.000004	1
GAAACGC	20	0.0012556084	40.000004	11
TAGGCTC	20	0.0012556084	40.000004	29
ATCGATA	20	0.0012556084	40.000004	25
AGTCGCC	30	4.866213E-6	40.000004	26
TCGCATC	25	7.793164E-5	40.0	31
TACGCCC	35	3.0552837E-7	40.0	19
GTATACG	25	7.793164E-5	40.0	1
GCGTAAG	100	0.0	38.0	1
TACGGGT	95	0.0	37.894737	4
ATTCGAA	70	0.0	37.142857	16
ACGACCA	555	0.0	37.117115	28
TAGACGG	50	3.423338E-9	36.0	2
TTATCGG	50	3.423338E-9	36.0	2
CGAGACA	585	0.0	35.897438	22