##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3553755_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 723953 Sequences flagged as poor quality 0 Sequence length 46 %GC 50 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.892748562406677 33.0 31.0 34.0 30.0 34.0 2 32.04010619473916 33.0 31.0 34.0 30.0 34.0 3 32.012246651371015 33.0 31.0 34.0 30.0 34.0 4 35.73617486218028 37.0 35.0 37.0 35.0 37.0 5 35.54961440867017 37.0 35.0 37.0 33.0 37.0 6 35.54002124447305 37.0 35.0 37.0 33.0 37.0 7 35.83343946361159 37.0 35.0 37.0 35.0 37.0 8 35.65906488404634 37.0 35.0 37.0 35.0 37.0 9 37.42520025471267 39.0 37.0 39.0 35.0 39.0 10 36.87200826572996 39.0 37.0 39.0 32.0 39.0 11 36.82654398835283 39.0 37.0 39.0 32.0 39.0 12 36.77802840792151 39.0 35.0 39.0 33.0 39.0 13 35.12644743512355 39.0 35.0 39.0 30.0 39.0 14 36.924711963345686 40.0 36.0 41.0 30.0 41.0 15 37.57153986515699 40.0 36.0 41.0 32.0 41.0 16 37.77564013133449 40.0 36.0 41.0 33.0 41.0 17 37.82105053781115 40.0 37.0 41.0 33.0 41.0 18 37.8600226810304 40.0 37.0 41.0 33.0 41.0 19 37.82906763284357 40.0 37.0 41.0 33.0 41.0 20 37.799470407609334 40.0 36.0 41.0 33.0 41.0 21 37.68725594064808 40.0 36.0 41.0 33.0 41.0 22 37.670241023933876 40.0 36.0 41.0 33.0 41.0 23 37.59946571117186 39.0 36.0 41.0 33.0 41.0 24 37.51759437422042 39.0 36.0 41.0 32.0 41.0 25 37.32788454499118 39.0 35.0 41.0 32.0 41.0 26 37.31431874721149 39.0 35.0 41.0 32.0 41.0 27 37.29366409145345 39.0 35.0 41.0 32.0 41.0 28 37.18185987211877 39.0 35.0 41.0 32.0 41.0 29 37.1300015332487 39.0 35.0 41.0 32.0 41.0 30 37.00843010526926 39.0 35.0 41.0 31.0 41.0 31 36.95709389974211 39.0 35.0 41.0 31.0 41.0 32 36.83868151661779 39.0 35.0 41.0 31.0 41.0 33 36.734796319650584 39.0 35.0 41.0 31.0 41.0 34 36.6526915421305 39.0 35.0 41.0 31.0 41.0 35 36.5613292575623 39.0 35.0 41.0 30.0 41.0 36 36.41856032090481 39.0 35.0 40.0 30.0 41.0 37 36.36982373165109 39.0 35.0 40.0 30.0 41.0 38 36.25919500299052 39.0 35.0 40.0 30.0 41.0 39 36.144286991006325 38.0 35.0 40.0 30.0 41.0 40 36.04012277040084 38.0 35.0 40.0 29.0 41.0 41 35.938280523735656 38.0 35.0 40.0 29.0 41.0 42 35.843148657440466 38.0 35.0 40.0 29.0 41.0 43 35.776155358151705 38.0 35.0 40.0 29.0 41.0 44 35.661081589550705 38.0 35.0 40.0 29.0 41.0 45 35.57544619609284 38.0 34.0 40.0 28.0 41.0 46 34.56946100092133 37.0 33.0 40.0 25.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 6.0 9 19.0 10 23.0 11 23.0 12 19.0 13 18.0 14 18.0 15 26.0 16 70.0 17 97.0 18 189.0 19 352.0 20 552.0 21 967.0 22 1460.0 23 2118.0 24 2986.0 25 4151.0 26 5555.0 27 7313.0 28 9216.0 29 11553.0 30 13996.0 31 17881.0 32 23113.0 33 31608.0 34 48858.0 35 60897.0 36 70719.0 37 100179.0 38 149424.0 39 160547.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 35.03390413466067 20.79858775362489 19.99231994342174 24.175188168292692 2 24.377963762840956 27.44377052101449 24.36718958274916 23.8110761333954 3 29.067494713054575 26.623137137355602 22.915576011149895 21.393792138439927 4 25.309654079753795 27.954715292291077 21.94728110802773 24.7883495199274 5 22.336809157500557 32.57131333111404 20.06677229046637 25.025105220919038 6 20.74803198550182 39.74180644323596 20.674684682569172 18.83547688869305 7 84.22563343200457 5.612795305772613 6.206342124419679 3.955229137803145 8 84.4625272635102 4.891892153219891 6.439506432047384 4.206074151222524 9 77.89124432110924 7.428106520727175 9.051140060197278 5.629509097966304 10 36.782222050326475 27.625135885893144 16.45977017845081 19.13287188532957 11 30.637762396177653 27.40675154326317 22.172157584815587 19.78332847574359 12 25.708575004178446 24.83862902702247 28.27421117116719 21.178584797631892 13 22.91433283652392 27.539494967214722 28.676723488955773 20.869448707305587 14 21.834014086549818 27.361859126213993 28.317860413590385 22.4862663736458 15 22.32783067409072 25.811205976078554 29.882464745639563 21.978498604191156 16 23.540616586988385 24.677292586673445 29.80138213392306 21.980708692415117 17 23.265046211563458 24.997340987605547 27.052999296915687 24.68461350391531 18 24.536813853938032 24.83282754543458 27.095405364712903 23.534953235914486 19 25.751533594031656 26.915559435488216 25.014469171341236 22.318437799138895 20 28.22531296921209 24.922059857476935 24.70740503872489 22.145222134586085 21 27.416696940270985 26.34729050090268 24.70353738433296 21.53247517449337 22 25.917980863398594 24.550074383281785 24.62922316780233 24.90272158551729 23 24.957006877518292 26.492465671114008 24.998722292745523 23.551805158622173 24 23.306209104734698 25.77252943215927 27.639225198320887 23.282036264785145 25 24.235413072395584 26.822321338539933 25.409522441373955 23.532743147690528 26 23.3658814867816 26.859616577319244 25.779712218887134 23.994789717012015 27 23.8543109842766 25.762445904637453 26.110258538883045 24.27298457220289 28 22.608650009047548 27.365726780605925 26.921360917076107 23.10426229327042 29 22.925935799699705 26.739166769113464 26.25902510245831 24.075872328728522 30 23.598493272353316 25.66920780768917 26.939594144923774 23.792704775033737 31 25.13270889132306 26.474232443266345 24.580877487903223 23.81218117750738 32 24.31994894696203 27.6222351450992 24.584883272809147 23.472932635129627 33 23.48646942550138 27.267377854639737 25.179949527110185 24.0662031927487 34 23.019726418703975 27.42332720494286 26.089124570241438 23.467821806111722 35 23.93857059781505 26.39038722126989 25.99160442735923 23.679437753555824 36 23.641866253748518 29.104099299263904 24.946094566912492 22.307939880075086 37 24.213312190155992 28.212466831410328 24.857138515898132 22.71708246253555 38 23.163658414289326 28.442177876188097 25.962044497363777 22.4321192121588 39 23.851272112968662 26.616368742169726 25.20757562990968 24.324783514951935 40 24.123941747599638 26.37077268828225 27.030760284162092 22.47452527995602 41 21.93761197204791 26.636121405671364 27.081177921771165 24.345088700509564 42 22.901901090264147 27.460622443722176 25.815073630470486 23.82240283554319 43 22.992100315904484 25.982902204977393 26.781158445368693 24.243839033749428 44 23.433427308126355 26.821630685969943 26.183191450273707 23.56175055562999 45 23.4092544681768 25.831787422664178 26.435694029861057 24.323264079297964 46 23.330243814170256 26.543573961293067 25.85665091518372 24.269531309352953 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 2471.0 1 2523.0 2 2575.0 3 3620.5 4 4666.0 5 3308.0 6 1950.0 7 1950.0 8 1788.5 9 1627.0 10 1676.0 11 1725.0 12 1761.0 13 1797.0 14 1763.5 15 1730.0 16 1767.0 17 1804.0 18 1908.5 19 2013.0 20 2013.0 21 2157.0 22 2301.0 23 2678.0 24 3055.0 25 4067.0 26 5079.0 27 5784.0 28 6489.0 29 7523.0 30 8557.0 31 8557.0 32 10366.0 33 12175.0 34 14213.5 35 16252.0 36 18399.5 37 20547.0 38 23817.5 39 27088.0 40 30190.0 41 33292.0 42 37091.0 43 40890.0 44 40890.0 45 47058.5 46 53227.0 47 55502.5 48 57778.0 49 56667.0 50 55556.0 51 54791.5 52 54027.0 53 51662.0 54 49297.0 55 48522.0 56 47747.0 57 47747.0 58 45932.0 59 44117.0 60 42565.0 61 41013.0 62 37478.5 63 33944.0 64 30259.0 65 26574.0 66 23115.5 67 19657.0 68 17032.5 69 14408.0 70 14408.0 71 12763.0 72 11118.0 73 9198.5 74 7279.0 75 6040.5 76 4802.0 77 3744.0 78 2686.0 79 2050.5 80 1415.0 81 1415.0 82 1083.5 83 752.0 84 537.5 85 323.0 86 198.5 87 74.0 88 50.0 89 26.0 90 30.0 91 34.0 92 23.0 93 12.0 94 12.0 95 8.0 96 4.0 97 2.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 46 723953.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 29.56850651073491 #Duplication Level Percentage of deduplicated Percentage of total 1 71.92883629913398 21.268282644205286 2 8.818427853378111 5.214954827941135 3 3.4889006131722042 3.0948474148766802 4 1.9932305417781768 2.3574740100785476 5 1.4187562945069523 2.097525236563748 6 1.1590481951955196 2.0562794463536562 7 0.9643416296567293 1.99598992285544 8 0.7935264723647606 1.8770714131646344 9 0.7422424359873152 1.9752300270931205 >10 8.478528921413329 51.86946651844156 >50 0.17385915931874968 3.1573385180289586 >100 0.03889571488163082 2.3186055215824988 >500 4.68623070863022E-4 0.09477835276175396 >1k 9.37246141726044E-4 0.622156146053034 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2336 0.3226728806980564 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 2154 0.29753312715051944 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 1.3813051399745563E-4 0.0 0.0 0.04654998321714255 0.0 2 1.3813051399745563E-4 0.0 0.0 0.2316448719737331 0.0 3 1.3813051399745563E-4 0.0 0.0 0.3453262849936391 0.0 4 1.3813051399745563E-4 0.0 0.0 0.474754576609255 0.0 5 1.3813051399745563E-4 0.0 0.0 0.8658020617360519 0.0 6 1.3813051399745563E-4 0.0 0.0 1.547338017799498 0.0 7 1.3813051399745563E-4 0.0 0.0 1.9519222932980456 0.0 8 1.3813051399745563E-4 0.0 0.0 2.7510073167733267 0.0 9 1.3813051399745563E-4 0.0 0.0 3.14440302063808 0.0 10 1.3813051399745563E-4 0.0 0.0 3.7669572472246124 0.0 11 1.3813051399745563E-4 0.0 0.0 4.369482549281514 0.0 12 1.3813051399745563E-4 0.0 0.0 4.883328061352049 0.0 13 1.3813051399745563E-4 0.0 0.0 5.132101117061467 0.0 14 1.3813051399745563E-4 0.0 0.0 5.263877627415039 0.0 15 1.3813051399745563E-4 0.0 0.0 5.414439887672266 0.0 16 2.7626102799491127E-4 0.0 0.0 5.714873755616732 0.0 17 2.7626102799491127E-4 0.0 0.0 6.044729423042656 0.0 18 2.7626102799491127E-4 0.0 0.0 6.446551088261255 0.0 19 2.7626102799491127E-4 0.0 0.0 6.631231585475852 0.0 20 4.143915419923669E-4 0.0 0.0 6.817984040400413 0.0 21 4.143915419923669E-4 0.0 0.0 7.051148348028118 0.0 22 4.143915419923669E-4 0.0 0.0 7.300612056307522 0.0 23 4.143915419923669E-4 0.0 0.0 7.575215518134464 0.0 24 4.143915419923669E-4 0.0 0.0 7.794152382820432 0.0 25 4.143915419923669E-4 0.0 0.0 7.989192668584839 0.0 26 4.143915419923669E-4 0.0 0.0 8.173458774257444 0.0 27 4.143915419923669E-4 0.0 0.0 8.367670276937867 0.0 28 4.143915419923669E-4 0.0 0.0 8.566025695038213 0.0 29 4.143915419923669E-4 0.0 0.0 8.777503511968318 0.0 30 4.143915419923669E-4 0.0 0.0 9.0498968855713 0.0 31 4.143915419923669E-4 0.0 0.0 9.273530187733181 0.0 32 4.143915419923669E-4 0.0 0.0 9.51843558905067 0.0 33 5.525220559898225E-4 0.0 0.0 9.743450196352526 0.0 34 5.525220559898225E-4 0.0 0.0 9.960315103328531 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GACCGAC 20 0.0012554611 40.0 9 TTATACG 20 0.0012554611 40.0 1 GTTACCA 20 0.0012554611 40.0 29 GTTCGAC 20 0.0012554611 40.0 21 CATACCG 20 0.0012554611 40.0 1 CGGTCTA 20 0.0012554611 40.0 31 ACGTAAG 25 7.791792E-5 40.0 1 ACCAACG 20 0.0012554611 40.0 29 CCAACGT 25 7.791792E-5 40.0 30 TGTACGC 20 0.0012554611 40.0 30 CTAACGG 95 0.0 37.894737 2 TATACGG 85 0.0 37.64706 2 AACGGGA 330 0.0 36.363636 4 CATACGA 100 0.0 36.0 18 GCGATCG 50 3.421519E-9 36.0 9 AATGCGG 95 0.0 35.789474 2 AACGGGC 165 0.0 35.151516 4 CTTAACG 40 8.6940054E-7 35.0 1 CCGTGCG 40 8.6940054E-7 35.0 1 TAATGCG 40 8.6940054E-7 35.0 1 >>END_MODULE