SRR3553753_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553753_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	784429
Sequences flagged as poor quality	0
Sequence length	46
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3910	0.49845174005550535	No Hit
CCTGTCTCTTATACACATCTGACGCCTACCCTCTCGTATGCCGTCT	2797	0.3565650938453321	No Hit
GCTGTCTCTTATACACATCTGACGCCTACCCTCTCGTATGCCGTCT	1627	0.2074120156190044	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1576	0.2009104711834978	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1504	0.1917318202157238	No Hit
CTGTCTCTTATACACATCTGACGCCTACCCTCTCGTATGCCGTCTT	1417	0.1806409502963302	No Hit
GAATCTGTCTCTTATACACATCTGACGCCTACCCTCTCGTATGCCG	1155	0.1472408592747081	No Hit
ATTCCTCCAGATCTCTACGCATTTCACCGCTACACCTGGAATTCTA	1065	0.1357675455649906	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCTACCCTCTCGTA	1035	0.13194310766175144	No Hit
AAAACTGTCTCTTATACACATCTGACGCCTACCCTCTCGTATGCCG	972	0.12391178806494915	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	913	0.1163903935219121	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTTGAT	20	0.0012555248	40.000004	25
CGTTCGA	20	0.0012555248	40.000004	15
CGTAGGT	20	0.0012555248	40.000004	20
GTATGCG	20	0.0012555248	40.000004	1
ACGTCGT	20	0.0012555248	40.000004	19
TTCGGAT	20	0.0012555248	40.000004	36
AATAGTA	20	0.0012555248	40.000004	32
TGTCGGC	20	0.0012555248	40.000004	12
TACGTTA	20	0.0012555248	40.000004	27
CTATGCG	60	0.0	40.0	1
GCCGATA	25	7.79239E-5	40.0	9
GCTACGA	45	1.2205419E-9	40.0	10
CCGCACG	25	7.79239E-5	40.0	1
GTACGAG	55	5.456968E-12	40.0	1
GCTAGCG	55	2.1645974E-10	36.363636	1
TGTTACG	50	3.421519E-9	36.0	1
CGTTAGG	95	0.0	35.789474	2
ATGGGTA	180	0.0	35.555557	5
GATCGGC	45	5.4387783E-8	35.555557	9
CTACGAA	45	5.4387783E-8	35.555557	11