SRR3553752_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553752_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1201310
Sequences flagged as poor quality	0
Sequence length	46
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATCTGTCTCTTATACACATCTGACGCACAATCCCTCGTATGCCG	8899	0.7407746543356836	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCACAATCCCTCGTA	6508	0.5417419317245341	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCACAATCCCTCG	5626	0.46832208172744755	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4761	0.3963173535557017	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3069	0.25547111070414796	No Hit
GCTGTCTCTTATACACATCTGACGCACAATCCCTCGTATGCCGTCT	2568	0.2137666380867553	No Hit
GAACTGTCTCTTATACACATCTGACGCACAATCCCTCGTATGCCGT	2246	0.18696256586559673	No Hit
GAATGACTGTCTCTTATACACATCTGACGCACAATCCCTCGTATGC	1656	0.13784951428024406	No Hit
CCTGTCTCTTATACACATCTGACGCACAATCCCTCGTATGCCGTCT	1527	0.12711123689971782	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGCACT	20	0.001255791	40.000004	21
GTCGACT	20	0.001255791	40.000004	39
CTACGCG	60	0.0	40.000004	1
TTGCGGT	20	0.001255791	40.000004	12
ATACGAG	30	4.8676975E-6	40.000004	1
TGTAACG	20	0.001255791	40.000004	1
GTACGAG	30	4.8676975E-6	40.000004	1
AACGCGT	25	7.794865E-5	40.0	40
TAATGCG	25	7.794865E-5	40.0	1
CTTACCG	25	7.794865E-5	40.0	1
TACGGGA	345	0.0	37.101448	4
CACGACC	470	0.0	36.595745	27
CGTATGG	110	0.0	36.363636	2
ACTACGG	155	0.0	36.129032	2
CGTCATA	50	3.425157E-9	36.0	38
CTAAACG	45	5.44278E-8	35.555553	1
AAACACG	485	0.0	35.463917	40
GCCGATA	85	0.0	35.29412	9
ACGACCA	490	0.0	35.10204	28
CGAACCC	80	0.0	35.000004	34