SRR3553750_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553750_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	570573
Sequences flagged as poor quality	0
Sequence length	46
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	4830	0.8465174482493913	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1844	0.3231838870749229	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1685	0.2953171636232349	No Hit
CCTGTCTCTTATACACATCTGACGCGCATGATTTCGTATGCCGTCT	1077	0.18875761734256616	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1064	0.1864792059911703	No Hit
CTGTCTCTTATACACATCTGACGCGCATGATTTCGTATGCCGTCTT	984	0.17245821305950335	No Hit
GCTGTCTCTTATACACATCTGACGCGCATGATTTCGTATGCCGTCT	957	0.16772612794506575	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGCATGATTTCGT	701	0.12285895056373154	No Hit
ATTCCTCCAGATCTCTACGCATTTCACCGCTACACCTGGAATTCTA	676	0.11847739027258564	No Hit
CAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGA	577	0.1011264115196478	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGTTGA	20	0.0012552371	40.000004	24
GCGCGTT	20	0.0012552371	40.000004	10
TAAACCG	20	0.0012552371	40.000004	1
ATCGTTG	20	0.0012552371	40.000004	23
CGAATAT	20	0.0012552371	40.000004	14
ACGTCGT	20	0.0012552371	40.000004	31
CGTCGTT	20	0.0012552371	40.000004	32
TCATACG	20	0.0012552371	40.000004	1
TTACCGG	20	0.0012552371	40.000004	2
TAATCGT	20	0.0012552371	40.000004	21
CTATACG	30	4.863199E-6	40.0	1
TCGTGGA	25	7.7897144E-5	40.0	35
CGCTAGA	25	7.7897144E-5	40.0	24
GTGTAAC	25	7.7897144E-5	40.0	13
GCGTATG	30	4.863199E-6	40.0	1
ATCGCCC	30	4.863199E-6	40.0	16
AATCGCC	30	4.863199E-6	40.0	15
GTAAGCG	35	3.0527735E-7	39.999996	1
ACGGGCG	265	0.0	36.981133	5
CATACGG	65	0.0	36.923077	2