SRR3553745_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553745_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	488522
Sequences flagged as poor quality	0
Sequence length	46
%GC	51

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2407	0.49271066604984015	No Hit
GAATCTGTCTCTTATACACATCTGACGCCACGGTGTTCGTATGCCG	1896	0.3881094403117976	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1610	0.32956550574999693	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCACGGTGTTCGTA	1106	0.22639717351521527	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCACGGTGTTCG	976	0.19978629416894222	No Hit
GCTGTCTCTTATACACATCTGACGCCACGGTGTTCGTATGCCGTCT	698	0.1428799521822968	No Hit
CCTGTCTCTTATACACATCTGACGCCACGGTGTTCGTATGCCGTCT	613	0.12548053107127213	No Hit
TATGAAAACTATGCCCTCGTGTACTCCTGCACCACCTTCTTCTGGC	537	0.10992340160729712	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGTTTG	20	0.00125506	40.000004	38
ATGCTAC	20	0.00125506	40.000004	25
CTAAACG	40	1.9244908E-8	40.000004	1
GTATGCG	20	0.00125506	40.000004	1
ACATGCG	20	0.00125506	40.000004	1
ATTAGTC	50	7.8216544E-11	40.0	31
TATGCGG	45	1.2187229E-9	40.0	2
GTTAACG	25	7.788067E-5	40.0	1
TCGTAAG	30	4.8617603E-6	40.0	1
TTAGTCA	45	1.2187229E-9	40.0	32
TTAAACG	25	7.788067E-5	40.0	1
TTGCCGC	25	7.788067E-5	40.0	19
TCAAGCG	190	0.0	38.94737	17
GCGAGAC	190	0.0	37.894737	21
GCGATAA	95	0.0	37.894737	9
TAAACGG	85	0.0	37.647057	2
CACGACC	205	0.0	37.07317	27
CTAACGG	60	1.4551915E-11	36.666664	2
ACGGGAC	165	0.0	36.363636	5
TCTACGG	55	2.1645974E-10	36.363636	2