##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3553745_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 488522 Sequences flagged as poor quality 0 Sequence length 46 %GC 51 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.810610371692576 31.0 31.0 34.0 30.0 34.0 2 31.948960333413847 33.0 31.0 34.0 30.0 34.0 3 31.910751204654037 33.0 31.0 34.0 30.0 34.0 4 35.65881372793856 37.0 35.0 37.0 33.0 37.0 5 35.46865647811153 37.0 35.0 37.0 33.0 37.0 6 35.46592783948318 37.0 35.0 37.0 33.0 37.0 7 35.72602052722293 37.0 35.0 37.0 35.0 37.0 8 35.511020998030794 37.0 35.0 37.0 33.0 37.0 9 37.30145418220674 39.0 37.0 39.0 34.0 39.0 10 36.77119147141787 39.0 37.0 39.0 32.0 39.0 11 36.70633052349741 39.0 37.0 39.0 32.0 39.0 12 36.68909076766246 39.0 35.0 39.0 32.0 39.0 13 35.15330527591388 39.0 35.0 39.0 30.0 39.0 14 36.882068770700194 39.0 36.0 41.0 30.0 41.0 15 37.45892099025223 39.0 36.0 41.0 32.0 41.0 16 37.65140362153598 39.0 36.0 41.0 33.0 41.0 17 37.65988225709385 39.0 36.0 41.0 33.0 41.0 18 37.69988864370489 39.0 36.0 41.0 33.0 41.0 19 37.64091279410139 39.0 36.0 41.0 33.0 41.0 20 37.56997023675495 39.0 36.0 41.0 32.0 41.0 21 37.46713556400735 39.0 36.0 41.0 32.0 41.0 22 37.4382689008888 39.0 36.0 41.0 32.0 41.0 23 37.363428873213486 39.0 35.0 41.0 32.0 41.0 24 37.28944448765869 39.0 35.0 41.0 32.0 41.0 25 37.09609802629155 39.0 35.0 41.0 31.0 41.0 26 37.04483523771703 39.0 35.0 41.0 31.0 41.0 27 37.0027982363128 39.0 35.0 41.0 31.0 41.0 28 36.86411256811362 39.0 35.0 41.0 31.0 41.0 29 36.80628712729416 39.0 35.0 40.0 31.0 41.0 30 36.663523853582845 39.0 35.0 40.0 31.0 41.0 31 36.599203311212186 39.0 35.0 40.0 30.0 41.0 32 36.461320063374835 39.0 35.0 40.0 30.0 41.0 33 36.308381198799644 39.0 35.0 40.0 30.0 41.0 34 36.16474181306062 38.0 35.0 40.0 30.0 41.0 35 36.011176569325436 38.0 35.0 40.0 29.0 41.0 36 35.859465899181615 38.0 35.0 40.0 29.0 41.0 37 35.757278075501205 38.0 35.0 40.0 29.0 41.0 38 35.69921723074908 38.0 35.0 40.0 28.0 41.0 39 35.52578389509582 38.0 34.0 40.0 27.0 41.0 40 35.41775191291283 38.0 34.0 40.0 27.0 41.0 41 35.286726083983936 38.0 34.0 40.0 26.0 41.0 42 35.23916425462927 38.0 34.0 40.0 27.0 41.0 43 35.192261556286105 38.0 34.0 40.0 27.0 41.0 44 35.14396281027262 38.0 34.0 40.0 27.0 41.0 45 35.058075173687165 37.0 34.0 40.0 26.0 41.0 46 34.068920130516126 36.0 33.0 40.0 23.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 5.0 9 17.0 10 19.0 11 16.0 12 15.0 13 8.0 14 19.0 15 21.0 16 47.0 17 79.0 18 143.0 19 306.0 20 489.0 21 849.0 22 1367.0 23 1965.0 24 2671.0 25 3446.0 26 4596.0 27 5861.0 28 7088.0 29 8784.0 30 10525.0 31 13312.0 32 17112.0 33 23120.0 34 34472.0 35 43046.0 36 49509.0 37 68509.0 38 96205.0 39 94901.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 31.731836027855447 20.51985376298304 19.647016920425283 28.10129328873623 2 22.1355435374456 29.828544057381244 24.516603141721355 23.5193092634518 3 27.732425561182506 27.887587457678464 24.08960087774962 20.29038610338941 4 24.90450788296126 27.899460003848343 23.477960050929127 23.71807206226127 5 22.63971735152153 32.01718653407625 20.764878552040646 24.578217562361573 6 20.263365825899346 39.73597913707059 21.261273801384583 18.739381235645478 7 82.04563970506958 5.504358043240632 8.442813220284858 4.007189031404931 8 82.50191393632221 5.934021395146995 7.212367099127573 4.35169756940322 9 76.39881110779044 6.880549903586737 9.85830730243469 6.862331686188135 10 38.1102591080852 25.888701020629572 17.230134978568007 18.770904892717216 11 30.83136481059195 26.436680436090903 22.611673578671994 20.120281174645154 12 25.146257486868556 23.07715926815988 28.689393722288862 23.087189522682706 13 22.860587650095596 25.859633752420567 30.1304751884255 21.149303409058344 14 22.01579458038737 26.375066015450688 28.706588444327995 22.90255095983395 15 20.96077556384359 25.018525266006442 31.333082235805144 22.68761693434482 16 23.16129058670848 23.910898587985802 29.33521929411572 23.592591531189996 17 22.75127834570398 24.71229545445241 27.343087926439342 25.19333827340427 18 23.511530698719813 24.291434162637508 27.44830324939307 24.748731889249616 19 25.055780497091224 26.117145184863734 25.668854217414978 23.158220100630064 20 27.718096626149897 24.354481476780983 25.482578061991067 22.44484383507805 21 26.90278022279447 26.359304186914816 25.100814292907998 21.637101297382717 22 25.436930168958614 24.00424136476965 25.1153479270125 25.443480539259234 23 25.26109366620132 25.82135502597631 24.83736658737989 24.080184720442478 24 23.59177273490242 24.87257482774573 27.66958294611092 23.86606949124093 25 24.469727054257536 26.65611784116171 25.200707439992463 23.673447664588288 26 23.181760493897922 26.32184425675814 25.69689799026451 24.799497259079427 27 24.47402573476732 25.315748318397123 25.11555262608439 25.094673320751166 28 22.846668113206775 26.87268945922599 26.61538272585472 23.66525970171251 29 24.04129189678254 25.345839081965604 25.216878666672127 25.395990354579734 30 24.080594118586266 25.987570672354572 25.16795558848936 24.7638796205698 31 25.320456397050695 25.982862593701 23.21942512312649 25.477255886121814 32 26.556429393149134 25.325369174776164 23.685524909830058 24.43267652224465 33 25.04841133050303 25.99432574172709 23.57703440172602 25.38022852604386 34 24.72498679690986 25.446346326265758 24.86745735094837 24.96120952587601 35 26.06269523173982 24.52090182223114 25.100404894764207 24.315998051264838 36 25.49813519145504 27.06060320722506 23.718276761333165 23.722984839986736 37 25.20746250936498 26.763789552978167 25.475004196330975 22.553743741325878 38 25.559544913023363 25.487490839716532 25.435701974527248 23.517262272732857 39 25.328439660854578 24.682614089027723 26.317136178104565 23.671810072013134 40 25.629142597467464 24.172913400010646 27.719324820581264 22.47861918194063 41 22.395306659679605 24.782507236112192 27.770499588554863 25.051686515653337 42 24.005264860129124 25.244308342305978 26.74864182165798 24.00178497590692 43 23.904348217685182 24.28038041275521 26.86450149635022 24.950769873209396 44 24.449257147068096 24.832453809654428 26.22891087811808 24.489378165159398 45 23.88572060214279 24.403199855891852 26.046728704132054 25.6643508378333 46 24.7346076532889 25.318614105403647 25.81419055846001 24.132587682847443 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1761.0 1 1819.0 2 1877.0 3 3132.5 4 4388.0 5 3052.5 6 1717.0 7 1717.0 8 1588.5 9 1460.0 10 1457.5 11 1455.0 12 1424.5 13 1394.0 14 1399.0 15 1404.0 16 1310.5 17 1217.0 18 1276.0 19 1335.0 20 1335.0 21 1295.5 22 1256.0 23 1518.0 24 1780.0 25 2456.5 26 3133.0 27 3524.0 28 3915.0 29 4999.5 30 6084.0 31 6084.0 32 6855.0 33 7626.0 34 8604.0 35 9582.0 36 10676.0 37 11770.0 38 13553.0 39 15336.0 40 16653.5 41 17971.0 42 20311.0 43 22651.0 44 22651.0 45 25603.0 46 28555.0 47 30574.0 48 32593.0 49 38243.0 50 43893.0 51 42776.0 52 41659.0 53 39234.0 54 36809.0 55 34765.0 56 32721.0 57 32721.0 58 31777.0 59 30833.0 60 29429.5 61 28026.0 62 26406.0 63 24786.0 64 22140.0 65 19494.0 66 17610.5 67 15727.0 68 13584.0 69 11441.0 70 11441.0 71 9965.5 72 8490.0 73 7038.5 74 5587.0 75 4733.0 76 3879.0 77 3077.5 78 2276.0 79 1868.5 80 1461.0 81 1461.0 82 1062.5 83 664.0 84 489.5 85 315.0 86 218.0 87 121.0 88 84.0 89 47.0 90 34.5 91 22.0 92 16.0 93 10.0 94 10.0 95 5.5 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 46 488522.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 34.02292082884061 #Duplication Level Percentage of deduplicated Percentage of total 1 70.72050689874449 24.061182071914597 2 8.663881539806233 5.895411113985624 3 3.8359219530023303 3.9152780673782988 4 2.504213095346287 3.4080257552605047 5 1.7942624847991338 3.0523025233239887 6 1.4915295269867295 3.044771460632855 7 1.2260542199366986 2.919976195974056 8 1.1120197607579152 3.026732822429826 9 0.9520449478353008 2.9152214897128323 >10 7.615930067489833 42.78617373319351 >50 0.05212067721287897 1.1810987300849172 >100 0.02666639299263575 1.764224988583546 >500 0.002424217544785068 0.5823014688826477 >1k 0.002424217544785068 1.447299578642813 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2407 0.49271066604984015 No Hit GAATCTGTCTCTTATACACATCTGACGCCACGGTGTTCGTATGCCG 1896 0.3881094403117976 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1610 0.32956550574999693 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCCACGGTGTTCGTA 1106 0.22639717351521527 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCCACGGTGTTCG 976 0.19978629416894222 No Hit GCTGTCTCTTATACACATCTGACGCCACGGTGTTCGTATGCCGTCT 698 0.1428799521822968 No Hit CCTGTCTCTTATACACATCTGACGCCACGGTGTTCGTATGCCGTCT 613 0.12548053107127213 No Hit TATGAAAACTATGCCCTCGTGTACTCCTGCACCACCTTCTTCTGGC 537 0.10992340160729712 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 2.0469907189440804E-4 0.0 0.0 0.07471516124145892 0.0 2 2.0469907189440804E-4 0.0 0.0 0.413901523370493 0.0 3 2.0469907189440804E-4 0.0 0.0 0.5962883964284106 0.0 4 2.0469907189440804E-4 0.0 0.0 0.8484776530023213 0.0 5 2.0469907189440804E-4 0.0 0.0 1.6603141721355434 0.0 6 2.0469907189440804E-4 0.0 0.0 2.5585336996082058 0.0 7 2.0469907189440804E-4 0.0 0.0 3.165057049631337 0.0 8 2.0469907189440804E-4 0.0 0.0 4.178522154580551 0.0 9 2.0469907189440804E-4 0.0 0.0 4.635001084905081 0.0 10 2.0469907189440804E-4 0.0 0.0 5.554918713998551 0.0 11 2.0469907189440804E-4 0.0 0.0 6.207294656126029 0.0 12 2.0469907189440804E-4 0.0 0.0 7.039805781520586 0.0 13 2.0469907189440804E-4 0.0 0.0 7.36036452810723 0.0 14 2.0469907189440804E-4 0.0 0.0 7.510613646877725 0.0 15 2.0469907189440804E-4 0.0 0.0 7.686245450563127 0.0 16 2.0469907189440804E-4 0.0 0.0 7.971391257712037 0.0 17 2.0469907189440804E-4 0.0 0.0 8.27516468040334 0.0 18 2.0469907189440804E-4 0.0 0.0 8.64341831074138 0.0 19 2.0469907189440804E-4 0.0 0.0 8.846684489132526 0.0 20 2.0469907189440804E-4 0.0 0.0 9.038282820425692 0.0 21 2.0469907189440804E-4 0.0 0.0 9.251988651483455 0.0 22 2.0469907189440804E-4 0.0 0.0 9.466513278828794 0.0 23 2.0469907189440804E-4 0.0 0.0 9.71338035953345 0.0 24 2.0469907189440804E-4 0.0 0.0 9.905797487114194 0.0 25 2.0469907189440804E-4 0.0 0.0 10.078972901936863 0.0 26 2.0469907189440804E-4 0.0 0.0 10.24273215945239 0.0 27 2.0469907189440804E-4 0.0 0.0 10.435763384248816 0.0 28 2.0469907189440804E-4 0.0 0.0 10.599522641764342 0.0 29 2.0469907189440804E-4 0.0 0.0 10.799513635005178 0.0 30 2.0469907189440804E-4 0.0 0.0 11.059890854454865 0.0 31 4.093981437888161E-4 0.0 0.0 11.24575761173499 0.0 32 4.093981437888161E-4 0.0 0.0 11.445339206832037 0.0 33 4.093981437888161E-4 0.0 0.0 11.631820061327842 0.0 34 4.093981437888161E-4 0.0 0.0 11.823008994477219 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCGTTTG 20 0.00125506 40.000004 38 ATGCTAC 20 0.00125506 40.000004 25 CTAAACG 40 1.9244908E-8 40.000004 1 GTATGCG 20 0.00125506 40.000004 1 ACATGCG 20 0.00125506 40.000004 1 ATTAGTC 50 7.8216544E-11 40.0 31 TATGCGG 45 1.2187229E-9 40.0 2 GTTAACG 25 7.788067E-5 40.0 1 TCGTAAG 30 4.8617603E-6 40.0 1 TTAGTCA 45 1.2187229E-9 40.0 32 TTAAACG 25 7.788067E-5 40.0 1 TTGCCGC 25 7.788067E-5 40.0 19 TCAAGCG 190 0.0 38.94737 17 GCGAGAC 190 0.0 37.894737 21 GCGATAA 95 0.0 37.894737 9 TAAACGG 85 0.0 37.647057 2 CACGACC 205 0.0 37.07317 27 CTAACGG 60 1.4551915E-11 36.666664 2 ACGGGAC 165 0.0 36.363636 5 TCTACGG 55 2.1645974E-10 36.363636 2 >>END_MODULE