SRR3553742_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553742_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1041901
Sequences flagged as poor quality	0
Sequence length	46
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4035	0.38727287909311925	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3126	0.30002850558738303	No Hit
CCTGTCTCTTATACACATCTGACGCCCGTGTATTCGTATGCCGTCT	2131	0.20452998893368948	No Hit
GAATCTGTCTCTTATACACATCTGACGCCCGTGTATTCGTATGCCG	1672	0.1604758993416841	No Hit
CTGTCTCTTATACACATCTGACGCCCGTGTATTCGTATGCCGTCTT	1649	0.15826839594164896	No Hit
TGAATGATACCTGTCTCTTATACACATCTGACGCCCGTGTATTCGT	1592	0.15279762664590973	No Hit
GCTGTCTCTTATACACATCTGACGCCCGTGTATTCGTATGCCGTCT	1531	0.1469429437153818	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGAGTAC	20	0.0012557148	40.0	34
ATAGCGC	25	7.794153E-5	40.0	12
ACGATAA	25	7.794153E-5	40.0	34
CATAACG	35	3.0560113E-7	40.0	1
GCGTGAT	20	0.0012557148	40.0	32
AATAGCG	65	0.0	40.0	1
TCGAAAG	30	4.867077E-6	40.0	1
GCCGAAC	90	0.0	37.77778	4
TACGCAT	75	0.0	37.333332	16
CTATGCG	50	3.423338E-9	36.0	1
GTATACG	50	3.423338E-9	36.0	1
CGGTCTA	50	3.423338E-9	36.0	31
TATGCGG	150	0.0	35.999996	2
CGTAAGG	150	0.0	35.999996	2
ACTTACT	1260	0.0	35.714283	38
CTATACG	45	5.4416887E-8	35.555557	1
GTCAACG	45	5.4416887E-8	35.555557	1
CAAATCG	45	5.4416887E-8	35.555557	1
TGTACCG	40	8.69888E-7	35.0	1
GCACTTA	1310	0.0	34.809162	36