SRR3553738_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553738_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	668788
Sequences flagged as poor quality	0
Sequence length	46
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3473	0.5192975950525428	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2346	0.35078380592953223	No Hit
CCTGTCTCTTATACACATCTGACGCGAGGATCATCGTATGCCGTCT	1387	0.20739008475032447	No Hit
GCTGTCTCTTATACACATCTGACGCGAGGATCATCGTATGCCGTCT	1074	0.1605890057835966	No Hit
GAATCTGTCTCTTATACACATCTGACGCGAGGATCATCGTATGCCG	953	0.14249657589550052	No Hit
CTGTCTCTTATACACATCTGACGCGAGGATCATCGTATGCCGTCTT	877	0.13113273563520877	No Hit
CGCTGTCTCTTATACACATCTGACGCGAGGATCATCGTATGCCGTC	719	0.10750790983091803	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATTCGCG	20	0.0012553921	40.000004	1
CACTCGA	20	0.0012553921	40.000004	17
TATTCCG	20	0.0012553921	40.000004	25
ACCACGA	20	0.0012553921	40.000004	22
TCACGAG	25	7.791155E-5	40.0	1
GCGATAT	45	1.2205419E-9	40.0	9
GTATACG	35	3.0538286E-7	40.0	1
GCGTAAG	25	7.791155E-5	40.0	1
ACGCATT	105	0.0	38.09524	17
TACGCAT	105	0.0	38.09524	16
CTAACGG	70	0.0	37.142857	2
AGTACGG	65	0.0	36.923077	2
ACGGGAT	370	0.0	36.756756	5
CGTTTTT	1560	0.0	36.538464	1
AAGCGTA	50	3.4197E-9	36.0	22
CGACTAA	50	3.4197E-9	36.0	17
TAAACGG	95	0.0	35.789474	2
TCGATCA	95	0.0	35.789474	17
TTACGGG	185	0.0	35.675674	3
TAAGCGA	45	5.4367774E-8	35.555553	13