Basic Statistics
Measure | Value |
---|---|
Filename | SRR3553738_1.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 668788 |
Sequences flagged as poor quality | 0 |
Sequence length | 46 |
%GC | 48 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 3473 | 0.5192975950525428 | No Hit |
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 2346 | 0.35078380592953223 | No Hit |
CCTGTCTCTTATACACATCTGACGCGAGGATCATCGTATGCCGTCT | 1387 | 0.20739008475032447 | No Hit |
GCTGTCTCTTATACACATCTGACGCGAGGATCATCGTATGCCGTCT | 1074 | 0.1605890057835966 | No Hit |
GAATCTGTCTCTTATACACATCTGACGCGAGGATCATCGTATGCCG | 953 | 0.14249657589550052 | No Hit |
CTGTCTCTTATACACATCTGACGCGAGGATCATCGTATGCCGTCTT | 877 | 0.13113273563520877 | No Hit |
CGCTGTCTCTTATACACATCTGACGCGAGGATCATCGTATGCCGTC | 719 | 0.10750790983091803 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
ATTCGCG | 20 | 0.0012553921 | 40.000004 | 1 |
CACTCGA | 20 | 0.0012553921 | 40.000004 | 17 |
TATTCCG | 20 | 0.0012553921 | 40.000004 | 25 |
ACCACGA | 20 | 0.0012553921 | 40.000004 | 22 |
TCACGAG | 25 | 7.791155E-5 | 40.0 | 1 |
GCGATAT | 45 | 1.2205419E-9 | 40.0 | 9 |
GTATACG | 35 | 3.0538286E-7 | 40.0 | 1 |
GCGTAAG | 25 | 7.791155E-5 | 40.0 | 1 |
ACGCATT | 105 | 0.0 | 38.09524 | 17 |
TACGCAT | 105 | 0.0 | 38.09524 | 16 |
CTAACGG | 70 | 0.0 | 37.142857 | 2 |
AGTACGG | 65 | 0.0 | 36.923077 | 2 |
ACGGGAT | 370 | 0.0 | 36.756756 | 5 |
CGTTTTT | 1560 | 0.0 | 36.538464 | 1 |
AAGCGTA | 50 | 3.4197E-9 | 36.0 | 22 |
CGACTAA | 50 | 3.4197E-9 | 36.0 | 17 |
TAAACGG | 95 | 0.0 | 35.789474 | 2 |
TCGATCA | 95 | 0.0 | 35.789474 | 17 |
TTACGGG | 185 | 0.0 | 35.675674 | 3 |
TAAGCGA | 45 | 5.4367774E-8 | 35.555553 | 13 |