SRR3553732_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553732_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	555378
Sequences flagged as poor quality	0
Sequence length	46
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3852	0.693581668701317	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2398	0.43177799624760077	No Hit
GAATCTGTCTCTTATACACATCTGACGCCTGATACGTCGTATGCCG	1042	0.18761996334028355	No Hit
GCTGTCTCTTATACACATCTGACGCCTGATACGTCGTATGCCGTCT	864	0.1555697200825384	No Hit
CTGTCTCTTATACACATCTGACGCCTGATACGTCGTATGCCGTCTT	816	0.1469269578557307	No Hit
CCTGTCTCTTATACACATCTGACGCCTGATACGTCGTATGCCGTCT	809	0.1456665550309879	No Hit
TGAATGATACCTGTCTCTTATACACATCTGACGCCTGATACGTCGT	730	0.13144200886603358	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCTGATACGTCGTA	585	0.1053336646392187	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGTTAG	20	0.0012552083	40.000004	1
CTATACG	20	0.0012552083	40.000004	1
TTCACCG	40	1.9252184E-8	40.000004	23
GAATAAC	20	0.0012552083	40.000004	9
CTACGCG	20	0.0012552083	40.000004	1
TCGTAAG	20	0.0012552083	40.000004	1
ACGTCCT	20	0.0012552083	40.000004	23
CCGTTAG	20	0.0012552083	40.000004	1
GAGTACG	25	7.789444E-5	40.0	1
TAGAACG	25	7.789444E-5	40.0	1
ATATACC	25	7.789444E-5	40.0	19
ACTACGG	30	4.8629645E-6	40.0	2
ATAACGG	35	3.0525734E-7	40.0	2
TAGTAGG	110	0.0	38.181816	2
CTAACGG	70	0.0	37.142857	2
AGTACGG	70	0.0	37.142857	2
TACGGGT	65	0.0	36.923077	4
CGTTAGG	55	2.1645974E-10	36.363636	2
CGGGATC	105	0.0	36.19048	6
GCGTAAG	50	3.417881E-9	36.0	1