SRR3553730_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553730_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	801266
Sequences flagged as poor quality	0
Sequence length	46
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	8079	1.0082793978528979	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3504	0.43730796015305784	No Hit
CGCTGTCTCTTATACACATCTGACGCGTTACAGCTCGTATGCCGTC	1521	0.1898246025664386	No Hit
CCTGTCTCTTATACACATCTGACGCGTTACAGCTCGTATGCCGTCT	1517	0.18932539256626388	No Hit
CTGTCTCTTATACACATCTGACGCGTTACAGCTCGTATGCCGTCTT	1278	0.15949759505582414	No Hit
CGTTTTCTGTCTCTTATACACATCTGACGCGTTACAGCTCGTATGC	1016	0.12679934004437976	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCGTTACAGCTCGTATGCC	949	0.11843757254145315	No Hit
GCTGTCTCTTATACACATCTGACGCGTTACAGCTCGTATGCCGTCT	936	0.1168151400408853	No Hit
CGTTTTTTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	833	0.10396048253638616	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTGATCG	20	0.0012555411	40.0	1
TTATCGG	20	0.0012555411	40.0	2
ACATGCG	40	1.9270374E-8	40.0	1
ATAACGG	95	0.0	37.894737	2
CGTTTTT	3585	0.0	37.433754	1
TAACGCC	65	0.0	36.923077	12
CTCGACG	65	0.0	36.923077	1
TCGTTTA	55	2.1645974E-10	36.363636	38
ACGATAG	55	2.1645974E-10	36.363636	1
CATCGTT	55	2.1645974E-10	36.363636	36
CCCTCGT	100	0.0	36.0	14
CGTGTAC	100	0.0	36.0	18
AACGGGA	440	0.0	35.909092	4
CACTTAC	710	0.0	35.774647	37
TACGGGA	230	0.0	35.652176	4
ACTACGG	85	0.0	35.29412	2
ACGGGAT	205	0.0	35.121952	5
TTAACGG	80	0.0	35.0	2
TTACCGG	40	8.6955515E-7	35.0	2
GCGTACG	40	8.6955515E-7	35.0	1