SRR3553729_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553729_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	679870
Sequences flagged as poor quality	0
Sequence length	46
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5376	0.7907394060629238	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2816	0.4141968317472458	No Hit
GAATCTGTCTCTTATACACATCTGACGCGTTGCTAGTCGTATGCCG	2414	0.355067880624237	No Hit
CCTGTCTCTTATACACATCTGACGCGTTGCTAGTCGTATGCCGTCT	1520	0.2235721534999338	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGTTGCTAGTCGTA	1388	0.20415667701178167	No Hit
GCTGTCTCTTATACACATCTGACGCGTTGCTAGTCGTATGCCGTCT	1383	0.20342124229632136	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGTTGCTAGTCG	1272	0.18709459161310252	No Hit
CTGTCTCTTATACACATCTGACGCGTTGCTAGTCGTATGCCGTCTT	1124	0.16532572403547735	No Hit
CGCTGTCTCTTATACACATCTGACGCGTTGCTAGTCGTATGCCGTC	985	0.1448806389456808	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACGCATG	35	3.0539195E-7	40.0	1
GCGAAAA	25	7.79129E-5	40.0	9
ATATGCG	20	0.0012554069	40.0	1
GTTAACG	20	0.0012554069	40.0	1
CCATCCG	20	0.0012554069	40.0	1
CACTACG	25	7.79129E-5	40.0	1
AATTCGG	25	7.79129E-5	40.0	2
CCACGTC	35	3.0539195E-7	40.0	37
TAGTCCG	40	1.9263098E-8	40.0	1
CGTTTTT	2230	0.0	37.309418	1
AACACGC	65	0.0	36.923077	23
CTACGCG	55	2.1645974E-10	36.363636	1
ACACGAC	260	0.0	36.153843	26
ACAACGG	50	3.4197E-9	36.0	2
TATCGAG	50	3.4197E-9	36.0	1
GTCAAGC	270	0.0	35.555557	16
GCCGATA	45	5.4369593E-8	35.555553	9
TCGTTTA	40	8.6929685E-7	35.0	38
CGCATCG	40	8.6929685E-7	35.0	21
TTCGTCG	40	8.6929685E-7	35.0	28