SRR3553726_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553726_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	669323
Sequences flagged as poor quality	0
Sequence length	46
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3138	0.4688319391385027	No Hit
CCTGTCTCTTATACACATCTGACGCGGTTTGTCTCGTATGCCGTCT	2148	0.32092128912348744	No Hit
GAATCTGTCTCTTATACACATCTGACGCGGTTTGTCTCGTATGCCG	2092	0.3125546260923351	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGGTTTGTCTCG	1998	0.2985105845757579	No Hit
GCTGTCTCTTATACACATCTGACGCGGTTTGTCTCGTATGCCGTCT	1965	0.29358022957525737	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGGTTTGTCTCGTA	1710	0.2554820318441171	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1556	0.2324737085084481	No Hit
CTGTCTCTTATACACATCTGACGCGGTTTGTCTCGTATGCCGTCTT	1245	0.18600884774615545	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCCGACA	25	7.791159E-5	40.000004	18
TGCGTAG	25	7.791159E-5	40.000004	1
TACCGAC	25	7.791159E-5	40.000004	4
CCTTACG	20	0.0012553931	40.0	17
GCGAAAC	20	0.0012553931	40.0	23
GCGTTAG	30	4.864465E-6	40.0	1
CGAATGT	20	0.0012553931	40.0	23
TCGTACA	30	4.864465E-6	40.0	34
TCGACGT	30	4.864465E-6	40.0	26
TATCGCG	30	4.864465E-6	40.0	1
TACGATT	35	3.0538286E-7	39.999996	11
GTACGAT	35	3.0538286E-7	39.999996	10
GCGATGT	95	0.0	37.894737	9
CTACGCA	130	0.0	36.923077	15
CGCTACA	120	0.0	36.666664	28
TATAGCG	60	1.4551915E-11	36.666664	1
TACACGA	230	0.0	36.52174	9
GCGGGAT	225	0.0	36.444443	5
CACAAAT	165	0.0	36.36364	32
CTATGCG	55	2.1645974E-10	36.363636	1