SRR3553725_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553725_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	881783
Sequences flagged as poor quality	0
Sequence length	46
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3484	0.39510854711419924	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2746	0.3114144863305371	No Hit
GAATCTGTCTCTTATACACATCTGACGCATGCTGTGTCGTATGCCG	2099	0.23804042491179803	No Hit
CCTGTCTCTTATACACATCTGACGCATGCTGTGTCGTATGCCGTCT	1692	0.1918839442357133	No Hit
GCTGTCTCTTATACACATCTGACGCATGCTGTGTCGTATGCCGTCT	1678	0.19029625202572514	No Hit
CTGTCTCTTATACACATCTGACGCATGCTGTGTCGTATGCCGTCTT	1447	0.16409933056092033	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCATGCTGTGTCG	1360	0.1542329575417081	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCATGCTGTGTCGTA	1333	0.1511709797081595	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTTCGCG	45	1.2205419E-9	40.0	1
AACGTCG	20	0.0012556099	40.0	1
CTATGCG	45	1.2205419E-9	40.0	1
CGGCGAT	40	1.9274012E-8	40.0	6
CTATACG	35	3.055302E-7	40.0	1
CCGGATG	25	7.7931756E-5	40.0	1
ATATGCG	20	0.0012556099	40.0	1
CTACGTA	20	0.0012556099	40.0	21
CATAGCG	45	1.2205419E-9	40.0	1
ACGCTAC	25	7.7931756E-5	40.0	21
AATAGCG	40	1.9274012E-8	40.0	1
TTCGCGG	85	0.0	40.0	2
CCACGCG	20	0.0012556099	40.0	1
TCGACAA	25	7.7931756E-5	40.0	19
CGTCGGG	70	0.0	37.142857	3
CGCACGG	140	0.0	37.142857	2
TTAACGG	65	0.0	36.923077	2
CGTTTTT	1870	0.0	36.791443	1
ACGCATT	115	0.0	36.52174	17
GCGATCG	55	2.1645974E-10	36.363636	9