SRR3553723_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553723_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	917219
Sequences flagged as poor quality	0
Sequence length	46
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3700	0.40339330083655045	No Hit
GAATCTGTCTCTTATACACATCTGACGCACACAACTTCGTATGCCG	2499	0.27245401588933504	No Hit
GCTGTCTCTTATACACATCTGACGCACACAACTTCGTATGCCGTCT	2348	0.2559912082065461	No Hit
CCTGTCTCTTATACACATCTGACGCACACAACTTCGTATGCCGTCT	2151	0.23451324056741082	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2129	0.23211468580568	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCACACAACTTCGTA	1954	0.2130352729282756	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCACACAACTTCG	1934	0.21085476859942937	No Hit
CTGTCTCTTATACACATCTGACGCACACAACTTCGTATGCCGTCTT	1893	0.20638473472529462	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	951	0.10368298083663771	No Hit
ATTCCTCCAGATCTCTACGCATTTCACCGCTACACCTGGAATTCTA	943	0.10281077910509921	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTAGACG	55	5.456968E-12	40.0	1
CCTTACG	20	0.0012556363	40.0	1
CTCCGTA	20	0.0012556363	40.0	14
CTATCGG	45	1.2205419E-9	40.0	2
GCTATCG	20	0.0012556363	40.0	1
CGTTCCG	25	7.793421E-5	40.0	2
TCTAGCG	55	5.456968E-12	40.0	1
TAGCACG	20	0.0012556363	40.0	1
TCTACGG	80	0.0	40.0	2
CGTAGAC	20	0.0012556363	40.0	30
TCGTAGA	20	0.0012556363	40.0	29
TATCGAT	25	7.793421E-5	40.0	32
ATTTCGA	25	7.793421E-5	40.0	34
ACTACGG	110	0.0	38.181816	2
CGGGCTA	85	0.0	37.647057	6
CGCAAGG	315	0.0	36.825397	2
GCGATAT	120	0.0	36.666668	9
ACGGGAA	495	0.0	36.363636	5
AATTGCG	55	2.1645974E-10	36.363636	1
ACGCATT	160	0.0	36.25	17