SRR3553722_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553722_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	721912
Sequences flagged as poor quality	0
Sequence length	46
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3110	0.43080042996930373	No Hit
GCTGTCTCTTATACACATCTGACGCTTTCCGAATCGTATGCCGTCT	1700	0.23548576557807602	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1695	0.2347931603851993	No Hit
CCTGTCTCTTATACACATCTGACGCTTTCCGAATCGTATGCCGTCT	1429	0.19794656412415917	No Hit
CTGTCTCTTATACACATCTGACGCTTTCCGAATCGTATGCCGTCTT	1269	0.17578319795210495	No Hit
GAATCTGTCTCTTATACACATCTGACGCTTTCCGAATCGTATGCCG	1229	0.1702423564090914	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTTTCCGAATCG	970	0.13436540741807868	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTTTCCGAATCGTA	899	0.12453041367922961	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	777	0.10763084697303826	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCGATCG	20	0.0012554583	40.000004	9
ATCGGGT	20	0.0012554583	40.000004	4
CGTCCGA	40	1.9266736E-8	40.000004	40
CCGCAAA	20	0.0012554583	40.000004	38
ACGGTAT	20	0.0012554583	40.000004	5
TAAACGG	50	7.8216544E-11	40.0	2
ACGTATG	35	3.054265E-7	40.0	1
TACCGAC	45	1.2205419E-9	40.0	4
TACGCAT	130	0.0	38.46154	16
ACCGCTA	125	0.0	38.4	26
GCGATGT	110	0.0	38.181816	9
TCCCTAC	325	0.0	37.53846	5
CTCGATC	155	0.0	37.419353	16
TACACGA	265	0.0	36.981133	9
GCCGATA	55	2.1645974E-10	36.363636	9
TCGATCA	155	0.0	36.129032	17
GGGCGTA	50	3.421519E-9	36.0	7
CTACGCG	50	3.421519E-9	36.0	1
CTACCGA	50	3.421519E-9	36.0	3
CCGCTAC	145	0.0	35.86207	27