SRR3553719_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553719_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	847021
Sequences flagged as poor quality	0
Sequence length	46
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATCTGTCTCTTATACACATCTGACGCCCTATCGTTCGTATGCCG	3683	0.43481802694384203	No Hit
CCTGTCTCTTATACACATCTGACGCCCTATCGTTCGTATGCCGTCT	2766	0.3265562483102544	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2750	0.3246672750734634	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCCTATCGTTCGTA	2627	0.3101457933156321	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCCTATCGTTCG	2444	0.28854066191983435	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2269	0.26788001714243215	No Hit
GCTGTCTCTTATACACATCTGACGCCCTATCGTTCGTATGCCGTCT	2263	0.2671716521786355	No Hit
CTGTCTCTTATACACATCTGACGCCCTATCGTTCGTATGCCGTCTT	1665	0.19657127745356962	No Hit
TCTGTCTCTTATACACATCTGACGCCCTATCGTTCGTATGCCGTCT	904	0.10672698787869486	No Hit
GAACTGTCTCTTATACACATCTGACGCCCTATCGTTCGTATGCCGT	901	0.10637280539679654	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CACTCGA	30	4.865995E-6	40.000004	36
ATACGAG	30	4.865995E-6	40.000004	11
GTTAACG	20	0.0012555816	40.0	1
GTCGTTA	20	0.0012555816	40.0	9
GTATACG	35	3.0551018E-7	40.0	1
CGGTCTA	50	7.8216544E-11	40.0	31
TACGTAG	45	1.2205419E-9	40.0	1
TACGAAT	105	0.0	38.09524	12
GCTACGA	105	0.0	38.09524	10
CGGGTAT	135	0.0	37.037037	6
ACGTAGG	130	0.0	36.923077	2
CTATACG	60	1.4551915E-11	36.666668	1
TACGCAT	105	0.0	36.19048	16
CTAGACG	50	3.423338E-9	36.0	1
TCGTGCG	50	3.423338E-9	36.0	1
CTACGCG	50	3.423338E-9	36.0	1
GCGTAAG	50	3.423338E-9	36.0	1
ATCCCTA	325	0.0	35.692307	4
TACACGA	265	0.0	35.4717	9
TGGGCGA	535	0.0	35.140186	6