SRR3553718_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553718_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	712759
Sequences flagged as poor quality	0
Sequence length	46
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATCTGTCTCTTATACACATCTGACGCTGATTACCTCGTATGCCG	2907	0.407851742314022	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2668	0.3743200717212971	No Hit
CCTGTCTCTTATACACATCTGACGCTGATTACCTCGTATGCCGTCT	2411	0.3382630033433461	No Hit
GCTGTCTCTTATACACATCTGACGCTGATTACCTCGTATGCCGTCT	2232	0.31314932536804163	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTGATTACCTCGTA	2052	0.2878953475157803	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTGATTACCTCG	1838	0.25787117384698055	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1680	0.23570379328777327	No Hit
CTGTCTCTTATACACATCTGACGCTGATTACCTCGTATGCCGTCTT	1616	0.22672460116252477	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTGGAC	20	0.0012554476	40.000004	37
GGCGTAT	20	0.0012554476	40.000004	8
GGCGTAA	20	0.0012554476	40.000004	8
CGTTCAC	20	0.0012554476	40.000004	30
ATCGTTG	40	1.9264917E-8	40.000004	23
TATTGCG	20	0.0012554476	40.000004	1
CCGTACG	20	0.0012554476	40.000004	1
CTAAACG	20	0.0012554476	40.000004	1
CTACGCA	40	1.9264917E-8	40.000004	15
TCGTAAG	40	1.9264917E-8	40.000004	1
ACCGTCC	20	0.0012554476	40.000004	27
CAATCGT	20	0.0012554476	40.000004	26
TCGAACG	20	0.0012554476	40.000004	1
GGCTCGA	20	0.0012554476	40.000004	23
AGTCGAC	20	0.0012554476	40.000004	24
CTAGACG	30	4.864909E-6	40.0	1
GCGAATT	25	7.791671E-5	40.0	9
GGTATAC	30	4.864909E-6	40.0	8
CGTAAGG	85	0.0	40.0	2
TATAGCG	35	3.0541923E-7	40.0	1