SRR3553715_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553715_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	426071
Sequences flagged as poor quality	0
Sequence length	46
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	4088	0.9594645023951407	No Hit
CCTGTCTCTTATACACATCTGACGCGAGGCGTATCGTATGCCGTCT	2025	0.47527290052596866	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1549	0.36355443106900026	No Hit
GCTGTCTCTTATACACATCTGACGCGAGGCGTATCGTATGCCGTCT	1433	0.33632892170553735	No Hit
CTGTCTCTTATACACATCTGACGCGAGGCGTATCGTATGCCGTCTT	1285	0.3015929270004295	No Hit
GAATCTGTCTCTTATACACATCTGACGCGAGGCGTATCGTATGCCG	911	0.2138141295699543	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	893	0.209589481565279	No Hit
ATTCCTCCAGATCTCTACGCATTTCACCGCTACACCTGGAATTCTA	825	0.19362970021428355	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	812	0.19057856554424027	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGAGGCGTATCG	704	0.1652306775161886	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGAGGCGTATCGTA	683	0.16030192151073414	No Hit
TCTGTCTCTTATACACATCTGACGCGAGGCGTATCGTATGCCGTCT	669	0.15701608417376445	No Hit
AAAACTGTCTCTTATACACATCTGACGCGAGGCGTATCGTATGCCG	614	0.14410743749281224	No Hit
ACTGTCTCTTATACACATCTGACGCGAGGCGTATCGTATGCCGTCT	602	0.1412910054896954	No Hit
TGCTCGGGAAAGCATCTTTGCTATAAGATAGCCAGGAAAAAGCCAG	564	0.132372304146492	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGAGGCGTATCGT	545	0.12791295347489032	No Hit
CGCTGTCTCTTATACACATCTGACGCGAGGCGTATCGTATGCCGTC	460	0.10796322678614596	No Hit
AAAAACTGTCTCTTATACACATCTGACGCGAGGCGTATCGTATGCC	439	0.10303447078069147	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTTGACG	20	0.0012548798	40.0	1
GTCATAC	40	1.9233994E-8	40.0	39
TCGTTCA	20	0.0012548798	40.0	16
TCGCAAG	45	1.2169039E-9	40.0	1
CGACGGT	20	0.0012548798	40.0	28
ACACCAG	20	0.0012548798	40.0	1
GATCAAT	20	0.0012548798	40.0	9
TCTAGCG	20	0.0012548798	40.0	1
CTAACCG	25	7.786385E-5	40.0	1
CCGTAGT	20	0.0012548798	40.0	27
ACCTACG	30	4.860296E-6	40.0	1
ACAGGCG	50	7.8216544E-11	40.0	33
TAACACG	20	0.0012548798	40.0	1
TATTAGT	50	7.8216544E-11	40.0	30
AATTCGC	20	0.0012548798	40.0	13
ACTAACG	40	1.9233994E-8	40.0	1
TCCAACG	25	7.786385E-5	40.0	1
TATAGCG	30	4.860296E-6	40.0	1
AACCTAT	20	0.0012548798	40.0	31
CGGTCTA	20	0.0012548798	40.0	31