SRR3553714_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553714_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	649399
Sequences flagged as poor quality	0
Sequence length	46
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATCTGTCTCTTATACACATCTGACGCGAATCACGTCGTATGCCG	4150	0.639052416157093	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGAATCACGTCGTA	3420	0.5266407863270501	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3394	0.5226370844426924	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3111	0.4790583293167991	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGAATCACGTCG	2908	0.4477986569120063	No Hit
GCTGTCTCTTATACACATCTGACGCGAATCACGTCGTATGCCGTCT	1522	0.23437054876893865	No Hit
CCTGTCTCTTATACACATCTGACGCGAATCACGTCGTATGCCGTCT	1027	0.15814622443212878	No Hit
GAACTGTCTCTTATACACATCTGACGCGAATCACGTCGTATGCCGT	980	0.1509087633334822	No Hit
CTGTCTCTTATACACATCTGACGCGAATCACGTCGTATGCCGTCTT	950	0.14628910731306946	No Hit
GAATGACTGTCTCTTATACACATCTGACGCGAATCACGTCGTATGC	810	0.12473071255114344	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCGAATCACGTCGTATG	684	0.10532815726541002	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AACCGAC	20	0.0012553653	40.0	40
AATCCGG	25	7.790903E-5	40.0	2
GATCGTT	25	7.790903E-5	40.0	9
CGATTAC	25	7.790903E-5	40.0	10
ACGATAG	25	7.790903E-5	40.0	1
TTCGGTA	20	0.0012553653	40.0	25
GTATACG	20	0.0012553653	40.0	1
TAGGCCG	20	0.0012553653	40.0	1
GTAAGCG	20	0.0012553653	40.0	1
CGCCGGT	75	0.0	40.0	28
CGCCACG	20	0.0012553653	40.0	16
TACACGA	180	0.0	38.88889	9
CGTAAGG	155	0.0	37.419353	2
CGACGCT	170	0.0	36.47059	13
CGTTTTT	1830	0.0	36.393444	1
TAAGCGG	105	0.0	36.190475	2
TACGGGT	95	0.0	35.78947	4
TACGGCT	500	0.0	35.6	7
GGTATAC	45	5.4362317E-8	35.555557	8
CTCGACG	45	5.4362317E-8	35.555557	1