SRR3553712_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553712_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	844643
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2940	0.3480760510653613	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2673	0.3164650627543234	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1392	0.16480335479013025	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCAATCGCTGTCGTATGCC	1383	0.16373781585829753	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	906	0.10726425247116238	No Hit
GGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	885	0.10477799496355264	No Hit
GCTGTCTCTTATACACATCTGACGCAATCGCTGTCGTATGCCGTCTTCTGC	877	0.103830849246368	TruSeq Adapter, Index 13 (95% over 21bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACGATAG	30	2.1648157E-6	45.000004	1
TATCGAG	30	2.1648157E-6	45.000004	1
CATTGCG	20	7.032223E-4	45.0	1
TAGAACG	40	6.8121153E-9	45.0	1
ATTACGG	20	7.032223E-4	45.0	2
CGATTGA	20	7.032223E-4	45.0	10
CCGTATG	20	7.032223E-4	45.0	1
CAATGCG	20	7.032223E-4	45.0	1
TATCGTC	40	6.8121153E-9	45.0	12
CGTTTAG	20	7.032223E-4	45.0	38
GTTAGCG	85	0.0	42.35294	1
TAGTTCG	45	1.9272193E-8	40.000004	1
TATTGCG	40	3.456771E-7	39.375	1
CGGTAGT	75	0.0	39.000004	12
CGAATAT	110	0.0	38.863636	14
TATAGCG	35	6.246324E-6	38.571426	1
GTGCGTA	35	6.246324E-6	38.571426	14
TGCGTAT	35	6.246324E-6	38.571426	15
CGTATGG	100	0.0	38.25	2
TACGGGA	250	0.0	37.800003	4