SRR3553710_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553710_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1034558
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2612	0.25247496998718294	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2043	0.19747563693867332	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	1512	0.1461493700691503	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCTATAGCGTCGTATGCCG	1144	0.11057862391475393	No Hit
GGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	1111	0.10738885591721295	No Hit
GAATCTGTCTCTTATACACATCTGACGCCTATAGCGTCGTATGCCGTCTTC	1065	0.1029425126479134	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCTATAGCGTCGTATGCC	1050	0.1014926181035766	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATTACGT	20	7.032958E-4	45.000004	8
ATTACCG	20	7.032958E-4	45.000004	42
CCGTCTA	20	7.032958E-4	45.000004	21
TTACGTC	20	7.032958E-4	45.000004	9
TACGTCG	20	7.032958E-4	45.000004	26
TAATGCG	55	1.8189894E-12	45.0	1
AATACGC	25	3.8905353E-5	45.0	27
GACGTAG	60	3.6379788E-12	41.250004	1
GACACGA	330	0.0	40.909092	25
ACGCATT	50	1.0804797E-9	40.5	17
TAACGGG	235	0.0	40.212765	3
TCGACAG	45	1.9279469E-8	40.0	1
AACACGT	345	0.0	39.782608	41
CACGACC	340	0.0	39.705883	27
CGAGACA	365	0.0	39.452053	22
CGACGGT	110	0.0	38.863636	28
GATCGTA	35	6.247683E-6	38.57143	10
ATAACGC	70	0.0	38.57143	11
GCGATAA	100	0.0	38.25	9
TAAACGG	65	9.094947E-12	38.076927	2