SRR3553701_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553701_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	661618
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2864	0.4328781865064131	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1749	0.2643519372205714	No Hit
TATATATATATATATATATATATATATATATATATATATATATATATATAT	1661	0.25105121081953635	No Hit
ATTCCTCCAGATCTCTACGCATTTCACCGCTACACCTGGAATTCTACCCCC	1541	0.23291385663630676	No Hit
GCTGTCTCTTATACACATCTGACGCCAGTACGTTCGTATGCCGTCTTCTGC	1461	0.22082228718082034	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1128	0.17049112932235821	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCAGTACGTTCGTATGCC	1122	0.16958426161319673	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCAGTACGTTCGTATGCCG	1072	0.16202703070351776	No Hit
GAATCTGTCTCTTATACACATCTGACGCCAGTACGTTCGTATGCCGTCTTC	918	0.13875075950170643	No Hit
CTGTCTCTTATACACATCTGACGCCAGTACGTTCGTATGCCGTCTTCTGCT	796	0.12031111608208968	Illumina Single End Adapter 2 (95% over 21bp)
ATATATATATATATATATATATATATATATATATATATATATATATATATA	689	0.10413864193537661	No Hit
GCTAAAGGTGTAATTTGAAATGGCCTTCGGGTAAATGCAAGATACTTAACT	665	0.1005111710987307	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AACGTAA	20	7.0311123E-4	45.000004	28
GTACCGG	40	6.8066583E-9	45.000004	2
CTCGTCA	35	1.210883E-7	45.000004	36
TTTACGT	20	7.0311123E-4	45.000004	29
GGCACGC	20	7.0311123E-4	45.000004	19
CTATACG	20	7.0311123E-4	45.000004	1
GACGTAG	30	2.164099E-6	45.000004	1
CACGCGT	20	7.0311123E-4	45.000004	39
GATTTCG	20	7.0311123E-4	45.000004	14
TACGGCA	20	7.0311123E-4	45.000004	32
CGTTCGG	20	7.0311123E-4	45.000004	2
TAGTTCG	20	7.0311123E-4	45.000004	19
CGTTAGA	20	7.0311123E-4	45.000004	23
GTAGCCG	20	7.0311123E-4	45.000004	43
CCGTACT	30	2.164099E-6	45.000004	44
TACGATG	30	2.164099E-6	45.000004	1
TGATTAC	20	7.0311123E-4	45.000004	11
GTCACGA	20	7.0311123E-4	45.000004	42
CGAATAT	35	1.210883E-7	45.000004	14
TTAAACG	30	2.164099E-6	45.000004	1