SRR3553697_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553697_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	684989
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2138	0.31212180049606636	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1311	0.19138993472887886	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1196	0.17460134396318774	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTTGTCAGGTCGTATGCC	973	0.1420460766523258	No Hit
GGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	941	0.13737446878709	No Hit
CCTGTCTCTTATACACATCTGACGCTTGTCAGGTCGTATGCCGTCTTCTGC	924	0.1348926771086835	Illumina Single End Adapter 1 (95% over 21bp)
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	716	0.10452722598465085	No Hit
TATATATATATATATATATATATATATATATATATATATATATATATATAT	713	0.104089262747285	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CAACGTT	20	7.0312875E-4	45.000004	27
CGGCATA	20	7.0312875E-4	45.000004	43
ATTCGAT	20	7.0312875E-4	45.000004	19
ATATGCG	30	2.1642118E-6	45.000004	1
TAACGGT	20	7.0312875E-4	45.000004	40
CTACGAA	115	0.0	45.000004	11
ACTCGCA	20	7.0312875E-4	45.000004	24
GTTCACG	20	7.0312875E-4	45.000004	1
CGCAAAC	30	2.1642118E-6	45.000004	14
CGCTTAG	20	7.0312875E-4	45.000004	10
AATCATC	25	3.8891485E-5	45.0	40
TTTACGT	45	3.8380676E-10	45.0	26
TAGACCG	25	3.8891485E-5	45.0	16
TAGCGCA	25	3.8891485E-5	45.0	24
GCGATAT	55	1.8189894E-12	45.0	9
TTACGTT	45	3.8380676E-10	45.0	27
TATCGAG	25	3.8891485E-5	45.0	1
TACGAAT	120	0.0	43.125004	12
GCTACGA	120	0.0	43.125004	10
CGAATAT	115	0.0	43.04348	14