SRR3553696_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553696_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	567557
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACCTGTCTCTTATACACATCTGACGCTGCAGCTTTCGTATGCCG	5294	0.932769748236741	No Hit
GAATCTGTCTCTTATACACATCTGACGCTGCAGCTTTCGTATGCCGTCTTC	3271	0.5763297783306347	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTGCAGCTTTCGTATGC	3125	0.5506054898450728	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2057	0.36243055763562076	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1283	0.22605658991079308	No Hit
ATTCCTCCAGATCTCTACGCATTTCACCGCTACACCTGGAATTCTACCCCC	1225	0.21583735201926857	No Hit
ATATATATACATATATATATGTATATATACATATATATATGTATATATACA	1198	0.21108012058700712	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1157	0.20385617656023977	No Hit
GCTGTCTCTTATACACATCTGACGCTGCAGCTTTCGTATGCCGTCTTCTGC	1044	0.18394628204744193	TruSeq Adapter, Index 13 (95% over 21bp)
GAATGACTGTCTCTTATACACATCTGACGCTGCAGCTTTCGTATGCCGTCT	953	0.16791265018315343	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCTGCAGCTTT	953	0.16791265018315343	No Hit
TATATATATATATATATATATATATATATATATATATATATATATATATAT	919	0.16192206245363902	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTGCAGCTTTCGTATGCC	791	0.13936926158958485	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCTGCAGCTTTCGTATGCCGTC	783	0.13795971153558145	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCTGCAGCTTTCGTA	717	0.1263309235900535	No Hit
GGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	681	0.11998794834703827	No Hit
TATGAAAACTATGCCCTCGTGTACTCCTGCACCACCTTCTTCTGGCTCTTC	677	0.11928317332003657	No Hit
GAACTGTCTCTTATACACATCTGACGCTGCAGCTTTCGTATGCCGTCTTCT	648	0.11417355437427429	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTTAGCG	30	2.1635515E-6	45.000004	1
GTCGCTC	30	2.1635515E-6	45.000004	22
TAACGCG	30	2.1635515E-6	45.000004	1
GTTAACG	30	2.1635515E-6	45.000004	1
CGTAAGC	55	1.8189894E-12	45.000004	43
CTTAACG	20	7.030266E-4	45.0	20
AACGTAA	20	7.030266E-4	45.0	39
AGTCCGC	20	7.030266E-4	45.0	17
ACGTTTA	20	7.030266E-4	45.0	22
CATGCGA	20	7.030266E-4	45.0	13
ACGCACT	20	7.030266E-4	45.0	11
CGCATGA	20	7.030266E-4	45.0	16
GGCCGTA	20	7.030266E-4	45.0	42
ATTACGA	20	7.030266E-4	45.0	14
TAGCGAA	20	7.030266E-4	45.0	14
CGTCTCA	35	1.2104829E-7	45.0	18
TAACGAA	20	7.030266E-4	45.0	34
ATCGTCC	20	7.030266E-4	45.0	12
TTAACGG	35	1.2104829E-7	45.0	2
TCGTAAG	20	7.030266E-4	45.0	42