SRR3553695_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553695_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1103276
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2056	0.18635409453300897	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1822	0.16514453319024433	No Hit
GCTGTCTCTTATACACATCTGACGCGTGACCTATCGTATGCCGTCTTCTGC	1545	0.1400374883528691	TruSeq Adapter, Index 16 (95% over 22bp)
CCTGTCTCTTATACACATCTGACGCGTGACCTATCGTATGCCGTCTTCTGC	1379	0.12499138928065143	TruSeq Adapter, Index 16 (95% over 22bp)
GGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	1378	0.12490075012961399	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGTGACCTATCGTATGCC	1190	0.10786058973457231	No Hit
CTGTCTCTTATACACATCTGACGCGTGACCTATCGTATGCCGTCTTCTGCT	1168	0.10586652841174829	TruSeq Adapter, Index 13 (95% over 22bp)
TGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	1149	0.10414438454203663	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTTAGCG	50	2.1827873E-11	45.0	1
TTCACGG	55	1.8189894E-12	45.0	2
CTAACGT	20	7.033164E-4	45.0	41
AATTGCG	20	7.033164E-4	45.0	1
TCGTACC	20	7.033164E-4	45.0	25
TCGACAT	20	7.033164E-4	45.0	15
GTACGCG	20	7.033164E-4	45.0	1
GACACGA	205	0.0	43.902435	25
TACGCAT	115	0.0	43.04348	16
TATCGCG	95	0.0	42.63158	32
CGTAAGG	180	0.0	42.5	2
CACGACC	215	0.0	41.860462	27
TATAGCG	70	0.0	41.785717	1
GCGTAAG	105	0.0	40.714287	1
GTATAAG	50	1.0822987E-9	40.5	1
ACACGAC	225	0.0	40.0	26
ACTAACG	40	3.4580626E-7	39.375	1
TCGTAAG	40	3.4580626E-7	39.375	1
ACGCATT	115	0.0	39.130436	17
TACGCGG	75	0.0	39.0	2