SRR3553692_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553692_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	656398
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2735	0.4166679362216217	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1396	0.21267584605681308	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1356	0.20658198227295027	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGACAACCATCGTATGCC	1270	0.19348017513764515	No Hit
ATTCCTCCAGATCTCTACGCATTTCACCGCTACACCTGGAATTCTACCCCC	823	0.12538124735297793	No Hit
CCTGTCTCTTATACACATCTGACGCGACAACCATCGTATGCCGTCTTCTGC	714	0.10877546854195168	No Hit
GCTGTCTCTTATACACATCTGACGCGACAACCATCGTATGCCGTCTTCTGC	713	0.10862312194735511	No Hit
GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA	700	0.10664261621759968	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATAACGC	30	2.1640735E-6	45.000004	11
GTACCGG	20	7.031073E-4	45.0	2
ACCGGAT	20	7.031073E-4	45.0	43
TTTCGCG	20	7.031073E-4	45.0	23
TCGGCGA	20	7.031073E-4	45.0	13
CATTAGA	25	3.888971E-5	45.0	22
CGTTAAG	20	7.031073E-4	45.0	2
GCCGATA	35	1.2108649E-7	45.0	9
TTGCGAA	20	7.031073E-4	45.0	28
GCGATAT	20	7.031073E-4	45.0	9
CCGACAG	20	7.031073E-4	45.0	15
CTCGAGG	50	2.1827873E-11	45.0	2
GTACGAG	35	1.2108649E-7	45.0	1
ACGCATT	120	0.0	43.125004	17
AGTACGG	75	0.0	42.0	2
TACGCAT	125	0.0	41.399998	16
GCTACGA	55	6.002665E-11	40.909092	10
GGCGATA	160	0.0	40.78125	8
TTAGGCG	50	1.0804797E-9	40.5	1
ATAGCGG	100	0.0	40.5	2