SRR3553686_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553686_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	445741
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2254	0.5056748201309729	No Hit
GCTGTCTCTTATACACATCTGACGCCCCTCAAATCGTATGCCGTCTTCTGC	1901	0.42648084874400155	No Hit
CCTGTCTCTTATACACATCTGACGCCCCTCAAATCGTATGCCGTCTTCTGC	1773	0.39776462115892414	No Hit
CTGTCTCTTATACACATCTGACGCCCCTCAAATCGTATGCCGTCTTCTGCT	1270	0.2849188205706901	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1166	0.26158688565781474	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCCCTCAAATCGTATGCC	897	0.20123793862355044	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	846	0.18979631669512118	No Hit
TCTGTCTCTTATACACATCTGACGCCCCTCAAATCGTATGCCGTCTTCTGC	809	0.1814955321588097	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCCCTCAAATCGTATGCCG	787	0.17655993054262453	No Hit
ATTCCTCCAGATCTCTACGCATTTCACCGCTACACCTGGAATTCTACCCCC	787	0.17655993054262453	No Hit
AAAACTGTCTCTTATACACATCTGACGCCCCTCAAATCGTATGCCGTCTTC	781	0.175213857374574	No Hit
GAATCTGTCTCTTATACACATCTGACGCCCCTCAAATCGTATGCCGTCTTC	754	0.16915652811834675	No Hit
ACTGTCTCTTATACACATCTGACGCCCCTCAAATCGTATGCCGTCTTCTGC	644	0.14447852003742084	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	583	0.13079344282890737	No Hit
AAAAACTGTCTCTTATACACATCTGACGCCCCTCAAATCGTATGCCGTCTT	453	0.10162852418781311	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGCCCC	20	7.028635E-4	45.0	6
CTATGCG	25	3.886949E-5	45.0	1
ACACGTG	40	6.7993824E-9	45.0	42
CCGGGAT	40	6.7993824E-9	45.0	5
ACCGGCT	20	7.028635E-4	45.0	35
CTCGTCA	40	6.7993824E-9	45.0	36
GGTCGAT	20	7.028635E-4	45.0	26
ACCGCAG	25	3.886949E-5	45.0	1
CGGTTAT	20	7.028635E-4	45.0	9
GCTATAA	20	7.028635E-4	45.0	9
CGACCTA	20	7.028635E-4	45.0	10
CACGACC	40	6.7993824E-9	45.0	27
TACGGGT	25	3.886949E-5	45.0	4
ATCACGC	40	6.7993824E-9	45.0	42
TAGCCGT	25	3.886949E-5	45.0	44
CGCCTAT	25	3.886949E-5	45.0	6
ACGATTG	25	3.886949E-5	45.0	24
TCGCTTG	20	7.028635E-4	45.0	40
CGAATAT	95	0.0	45.0	14
CATACCC	20	7.028635E-4	45.0	44