SRR3553685_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553685_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	655452
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2619	0.3995715933432197	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1388	0.21176226481878155	No Hit
GCTGTCTCTTATACACATCTGACGCAATAGGGGTCGTATGCCGTCTTCTGC	1182	0.18033357133703154	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1134	0.17301038062283738	No Hit
CCTGTCTCTTATACACATCTGACGCAATAGGGGTCGTATGCCGTCTTCTGC	1128	0.1720949817835631	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCAATAGGGGTCGTATGCC	1073	0.16370382575688228	No Hit
CTGTCTCTTATACACATCTGACGCAATAGGGGTCGTATGCCGTCTTCTGCT	1055	0.16095762923905946	Illumina Single End Adapter 2 (95% over 21bp)
GGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	802	0.12235831151632766	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AAGTACG	45	3.8380676E-10	45.0	1
CGTTCTA	25	3.8889655E-5	45.0	27
TCGATAC	20	7.031065E-4	45.0	25
GAGCGTA	20	7.031065E-4	45.0	8
CGGATAG	25	3.8889655E-5	45.0	29
TACGAAG	20	7.031065E-4	45.0	1
TCATCGA	25	3.8889655E-5	45.0	16
CGTCGTT	20	7.031065E-4	45.0	20
AGTTAGT	25	3.8889655E-5	45.0	30
GATTCGC	20	7.031065E-4	45.0	11
TCGAACG	20	7.031065E-4	45.0	26
TAGTACG	25	3.8889655E-5	45.0	1
TCGATAG	30	2.164068E-6	44.999996	1
CGTTAGG	60	0.0	44.999996	2
TATACGG	30	2.164068E-6	44.999996	2
ATAACGC	100	0.0	42.75	11
TAGGGCA	280	0.0	42.589283	5
GTAGGGT	220	0.0	41.93182	4
CGCATCG	70	0.0	41.785713	21
TCGTTGC	60	3.6379788E-12	41.249996	16