##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3553683_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1427091 Sequences flagged as poor quality 0 Sequence length 51 %GC 49 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.23658056844308 33.0 31.0 34.0 30.0 34.0 2 32.392753510462896 34.0 31.0 34.0 30.0 34.0 3 32.4094854497716 34.0 31.0 34.0 30.0 34.0 4 35.9306953796219 37.0 35.0 37.0 35.0 37.0 5 35.85455797843305 37.0 35.0 37.0 35.0 37.0 6 35.813639774898725 37.0 35.0 37.0 35.0 37.0 7 35.942022618039076 37.0 35.0 37.0 35.0 37.0 8 35.86095630902304 37.0 35.0 37.0 35.0 37.0 9 37.641743939244236 39.0 38.0 39.0 35.0 39.0 10 37.15420670440778 39.0 37.0 39.0 34.0 39.0 11 37.05896190221927 39.0 37.0 39.0 33.0 39.0 12 36.92597668964348 39.0 37.0 39.0 33.0 39.0 13 36.89228157139243 39.0 37.0 39.0 33.0 39.0 14 38.06247534319816 40.0 37.0 41.0 33.0 41.0 15 38.1557356888944 40.0 37.0 41.0 33.0 41.0 16 38.22367459398174 40.0 37.0 41.0 33.0 41.0 17 38.14629760821139 40.0 37.0 41.0 33.0 41.0 18 38.08379143306208 40.0 37.0 41.0 33.0 41.0 19 37.99840724943259 40.0 37.0 41.0 33.0 41.0 20 37.92728354393658 40.0 36.0 41.0 33.0 41.0 21 37.82435177574521 40.0 36.0 41.0 33.0 41.0 22 37.777157868699334 40.0 36.0 41.0 33.0 41.0 23 37.67110436545392 40.0 36.0 41.0 33.0 41.0 24 37.630910712771644 40.0 35.0 41.0 33.0 41.0 25 37.53853117986169 40.0 35.0 41.0 33.0 41.0 26 37.44790346235804 40.0 35.0 41.0 33.0 41.0 27 37.377892510008124 39.0 35.0 41.0 33.0 41.0 28 37.26050546181008 39.0 35.0 41.0 32.0 41.0 29 37.16536226491513 39.0 35.0 41.0 32.0 41.0 30 36.99143572484165 39.0 35.0 41.0 31.0 41.0 31 36.85883170729827 39.0 35.0 41.0 31.0 41.0 32 36.70339382702294 39.0 35.0 41.0 31.0 41.0 33 36.57915998349089 39.0 35.0 41.0 30.0 41.0 34 36.394830462808606 39.0 35.0 41.0 30.0 41.0 35 36.22241538906769 39.0 35.0 41.0 30.0 41.0 36 36.08887379991886 39.0 35.0 41.0 29.0 41.0 37 36.01556102589113 39.0 35.0 41.0 29.0 41.0 38 35.885836292149556 38.0 35.0 41.0 29.0 41.0 39 35.808169205747916 38.0 35.0 41.0 28.0 41.0 40 35.676560219355316 38.0 35.0 40.0 28.0 41.0 41 35.514346317088396 38.0 34.0 40.0 27.0 41.0 42 35.39025752387199 38.0 34.0 40.0 27.0 41.0 43 35.28930951144671 38.0 34.0 40.0 26.0 41.0 44 35.159270852384324 38.0 34.0 40.0 26.0 41.0 45 35.06709733296615 38.0 34.0 40.0 26.0 41.0 46 34.91858823298584 37.0 34.0 40.0 25.0 41.0 47 34.80123341819127 37.0 34.0 40.0 25.0 41.0 48 34.62892555555322 37.0 34.0 40.0 24.0 41.0 49 34.573648772222654 37.0 33.0 40.0 24.0 41.0 50 34.478542013088166 36.0 33.0 40.0 24.0 41.0 51 33.05900044215821 35.0 31.0 39.0 20.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 6.0 10 5.0 11 9.0 12 21.0 13 35.0 14 55.0 15 85.0 16 201.0 17 391.0 18 678.0 19 1288.0 20 2118.0 21 3216.0 22 4729.0 23 6684.0 24 9220.0 25 12343.0 26 15387.0 27 18190.0 28 20294.0 29 23836.0 30 28107.0 31 34596.0 32 43734.0 33 59196.0 34 97668.0 35 115318.0 36 120423.0 37 168773.0 38 265145.0 39 375222.0 40 118.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 44.26087754740237 18.670778527788347 22.983607912880117 14.084736011929161 2 32.97189877870437 23.90415187258556 24.582524870523322 18.541424478186745 3 32.6195736641882 25.12103292642165 25.064133962024847 17.195259447365306 4 27.728645195015595 27.163159181860163 25.567745855029568 19.540449768094675 5 24.528288665544103 31.486219168924755 24.454572273246768 19.530919892284373 6 24.720988360237715 36.25781397261982 24.680276170195175 14.340921496947287 7 82.47392773130795 6.284392515964293 7.404363141523561 3.837316611204191 8 84.35215413733252 4.921620275091077 7.2186006358389205 3.5076249517374856 9 78.8442362820591 7.55284701536202 8.850591868353174 4.752324834225708 10 40.75591535508247 25.953495607498052 16.555496460982518 16.735092576436962 11 31.646615387526094 27.51590473207385 21.921727486193944 18.915752394206116 12 27.391595910842405 24.36326765427012 28.179702625831148 20.065433809056323 13 25.393965766724058 24.746634937786027 28.846513642087295 21.01288565340262 14 22.431996277742623 27.027919032493376 29.051476044625048 21.488608645138957 15 22.92923156266839 25.380091388706116 30.21138806144808 21.479288987177412 16 25.924976052683395 24.030843162769578 29.07908465542842 20.965096129118603 17 25.34113101406988 24.22424358362571 27.279970233152618 23.15465516915179 18 26.05222792379743 23.561286561263437 27.552132274676243 22.834353240262885 19 25.964216717784637 25.80332999086954 25.818535748596272 22.41391754274955 20 27.055457570680495 25.566834911018287 25.785601618957728 21.59210589934349 21 26.837111298438572 26.11045826790303 25.774810436054885 21.277619997603516 22 25.71503849439174 23.61278993420882 26.091538661514928 24.580632909884514 23 24.417013350935573 26.866471724648257 25.956508729996898 22.760006194419276 24 23.834569764647103 26.12972823737239 28.028275702110093 22.00742629587041 25 24.919854445161523 26.195876787114486 26.137716515625144 22.74655225209885 26 23.503967161169122 26.27533913394451 25.947329217267857 24.27336448761852 27 23.70458506149923 25.576504932061095 27.358241345506347 23.360668660933325 28 22.466051569241205 27.37603979003441 27.830881142127588 22.327027498596795 29 24.051935020261496 26.681760308207398 26.513866319667073 22.752438351864036 30 24.17848616521301 25.303151656061175 28.011528346825816 22.506833831899996 31 25.6587701835412 26.844188632680044 24.913968345396334 22.583072838382414 32 25.145207979028665 26.766968609570096 25.583021685372554 22.504801726028685 33 24.94823385474367 26.367834987397444 24.31337595149854 24.37055520636035 34 23.374543038951266 27.53615571817074 26.47126216898572 22.618039073892273 35 24.19957802270493 27.437283256638857 25.463057366348746 22.90008135430747 36 24.032384760327126 29.474224138474703 24.50733695328469 21.986054147913485 37 24.10841354896079 27.9479024112688 24.525485760894014 23.4181982788764 38 24.34175536108069 27.778677043019684 24.754062635108763 23.12550496079087 39 24.536837524726874 26.20043150717088 24.71293000936871 24.549800958733535 40 24.81930024083958 25.766962303034635 26.397265486223375 23.016471969902412 41 22.88179240146564 26.43132077772195 26.357884675889625 24.329002144922786 42 23.59232873026317 26.92596337584639 25.78665270820151 23.69505518568893 43 23.264879394516537 25.983276469405244 26.115012987959425 24.636831148118794 44 23.234537951679325 25.96772034859725 26.535799048554015 24.261942651169406 45 23.849425159292576 25.95216422778926 25.982715888475227 24.21569472444294 46 24.30062273534063 26.049705309612353 25.916497266116878 23.733174688930138 47 22.75412009465409 27.63229534766879 26.649036396417607 22.96454816125951 48 22.98374805811262 27.629072007321188 26.451221400737584 22.935958533828607 49 24.25472517169543 26.71154117011459 25.905005357051515 23.12872830113847 50 22.739965426171143 26.56845288772755 26.95721576269488 23.734365923406425 51 23.094883227488648 26.437417095335896 25.61644632332486 24.851253353850595 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 3617.0 1 3730.5 2 3844.0 3 7022.5 4 10201.0 5 7404.0 6 4607.0 7 4994.0 8 5381.0 9 6206.0 10 7031.0 11 6338.0 12 5645.0 13 5583.5 14 5522.0 15 5434.0 16 5346.0 17 5011.5 18 4677.0 19 4759.0 20 4841.0 21 5235.5 22 5630.0 23 5881.5 24 6133.0 25 7238.5 26 10633.0 27 12922.0 28 15502.5 29 18083.0 30 20291.0 31 22499.0 32 25296.0 33 28093.0 34 31865.0 35 35637.0 36 38298.5 37 40960.0 38 43525.5 39 46091.0 40 49934.5 41 53778.0 42 59749.0 43 65720.0 44 69653.5 45 73587.0 46 79504.0 47 85421.0 48 91074.0 49 96727.0 50 97409.5 51 98092.0 52 95443.0 53 92794.0 54 89550.5 55 86307.0 56 82401.5 57 78496.0 58 76754.0 59 75012.0 60 70501.5 61 65991.0 62 62461.5 63 58932.0 64 54602.0 65 50272.0 66 44425.5 67 38579.0 68 35613.5 69 32648.0 70 28826.0 71 25004.0 72 23022.5 73 21041.0 74 18726.0 75 13755.0 76 11099.0 77 9098.0 78 7097.0 79 5837.5 80 4578.0 81 3344.0 82 2110.0 83 1640.0 84 1170.0 85 890.0 86 610.0 87 421.5 88 233.0 89 169.0 90 105.0 91 84.0 92 63.0 93 69.0 94 75.0 95 48.5 96 22.0 97 14.5 98 7.0 99 6.5 100 6.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1427091.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 22.693707199774312 #Duplication Level Percentage of deduplicated Percentage of total 1 76.18664901460336 17.289575052693827 2 7.881746795992845 3.5773210802204183 3 2.860078775996896 1.947173709322874 4 1.5660206446315776 1.4215525591228337 5 0.9897454275700615 1.1230496467795206 6 0.7518605675024411 1.023750214437393 7 0.5857376966510217 0.930479184856796 8 0.481876827023099 0.8748457295054801 9 0.4343195346541148 0.8870688315524443 >10 6.17507314411126 35.051004693002284 >50 1.916222523750875 29.064201836889037 >100 0.16569508620082157 5.441054105286513 >500 0.0027978532378393835 0.3995867805739287 >1k 0.0018652354918929225 0.5989568797797767 >5k 3.108725819821537E-4 0.37037969597689374 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 5250 0.36788123532416644 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 2772 0.19424129225115988 No Hit GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT 1547 0.10840233734218771 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.03699834138117331 0.0 2 0.0 0.0 0.0 0.1531787391273577 0.0 3 0.0 0.0 0.0 0.22290099229831875 0.0 4 0.0 0.0 0.0 0.3164479349950354 0.0 5 0.0 0.0 0.0 0.6060580579654696 0.0 6 7.007261625222217E-5 0.0 0.0 0.906739654303755 0.0 7 7.007261625222217E-5 0.0 0.0 1.1396610307261414 0.0 8 7.007261625222217E-5 0.0 0.0 1.5203655548244646 0.0 9 7.007261625222217E-5 0.0 0.0 1.7134156125993367 0.0 10 7.007261625222217E-5 0.0 0.0 2.105191610065511 0.0 11 7.007261625222217E-5 0.0 0.0 2.584908740928224 0.0 12 7.007261625222217E-5 0.0 0.0 2.9591665843313426 0.0 13 7.007261625222217E-5 0.0 0.0 3.112555541307457 0.0 14 7.007261625222217E-5 0.0 0.0 3.1869025871510646 0.0 15 7.007261625222217E-5 0.0 0.0 3.2931326733894335 0.0 16 7.007261625222217E-5 0.0 0.0 3.513230761037663 0.0 17 7.007261625222217E-5 0.0 0.0 3.7835709145387364 0.0 18 7.007261625222217E-5 0.0 0.0 4.083341566865743 0.0 19 7.007261625222217E-5 0.0 0.0 4.256280783776227 0.0 20 7.007261625222217E-5 0.0 0.0 4.423403973537777 0.0 21 7.007261625222217E-5 0.0 0.0 4.6395079220596305 0.0 22 7.007261625222217E-5 0.0 0.0 4.854841071802709 0.0 23 7.007261625222217E-5 0.0 0.0 5.068212188290726 0.0 24 7.007261625222217E-5 0.0 0.0 5.257057889090464 0.0 25 7.007261625222217E-5 0.0 0.0 5.432519720186029 0.0 26 7.007261625222217E-5 0.0 0.0 5.588921799660989 0.0 27 7.007261625222217E-5 0.0 0.0 5.765014284302823 0.0 28 7.007261625222217E-5 0.0 0.0 5.934239652551939 0.0 29 1.4014523250444435E-4 0.0 0.0 6.115937946493951 0.0 30 2.1021784875666652E-4 0.0 0.0 6.338488575711009 0.0 31 2.1021784875666652E-4 0.0 0.0 6.5321692870321515 0.0 32 2.1021784875666652E-4 0.0 0.0 6.734959438466082 0.0 33 2.802904650088887E-4 0.0 0.0 6.932213853216088 0.0 34 2.802904650088887E-4 0.0 0.0 7.129328122733589 0.0 35 2.802904650088887E-4 0.0 0.0 7.335762050212636 0.0 36 2.802904650088887E-4 0.0 0.0 7.526079275953671 0.0 37 2.802904650088887E-4 0.0 0.0 7.716396501694706 0.0 38 2.802904650088887E-4 0.0 0.0 7.924372026731302 0.0 39 2.802904650088887E-4 0.0 0.0 8.183991069945785 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGAATAC 25 3.8912804E-5 45.000004 14 GTCGGTA 25 3.8912804E-5 45.000004 1 ACGCGTC 20 7.0338603E-4 45.0 15 CGAATAT 225 0.0 41.0 14 CATGACG 50 1.0822987E-9 40.500004 1 TTAACGG 100 0.0 40.500004 2 CGTAAGG 205 0.0 39.512196 2 GCGTACG 40 3.4590084E-7 39.375 1 CATCGTT 155 0.0 39.19355 36 TACGAAT 230 0.0 39.130432 12 GCGTAAG 150 0.0 39.0 1 ACACGAC 665 0.0 38.571426 26 ATAACGC 165 0.0 38.181816 11 CAATGCG 65 9.094947E-12 38.07692 1 CGGCATC 160 0.0 37.96875 33 CGTATGG 155 0.0 37.74194 2 CGAGCAT 60 1.5643309E-10 37.500004 6 TATCGAG 60 1.5643309E-10 37.500004 1 GCGAGAC 690 0.0 37.5 21 GCTACGA 255 0.0 37.058823 10 >>END_MODULE